MmuEX6014705 @ mm10
Exon Skipping
Gene
ENSMUSG00000030862 | Cpxm2
Description
carboxypeptidase X 2 (M14 family) [Source:MGI Symbol;Acc:MGI:1926006]
Coordinates
chr7:132070817-132080121:-
Coord C1 exon
chr7:132080037-132080121
Coord A exon
chr7:132078773-132078923
Coord C2 exon
chr7:132070817-132070905
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTTGAGCATCAATAGATA
3' ss Score
-0.45
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GAGTGACTGGGTGACATCCTATAAAGTCATGGTGAGCAATGACAGCCACACATGGGTTACTGTGAAGAATGGATCTGGCGACATG
Seq A exon
ATATTTGAAGGAAACAGTGAGAAGGAGATTCCTGTGCTCAATGAGCTGCCAGTCCCCATGGTGGCCCGCTACATTCGCATAAACCCTCAGTCCTGGTTTGATAACGGGAGCATCTGCATGAGGATGGAGATCTTGGGCTGCCCACTGCCGG
Seq C2 exon
ATCCTAATAACTATTATCACCGACGTAATGAGATGACCACCACGGATGACCTGGATTTTAAGCACCACAACTATAAGGAAATGCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030862-'16-11,'16-9,17-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(19.9=100)
A:
PF0075420=F5_F8_type_C=PD(30.5=84.3)
C2:
PF0024619=Peptidase_M14=PU(0.6=6.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGACTGGGTGACATCCTA
R:
GGCGCATTTCCTTATAGTTGTGG
Band lengths:
172-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types