HsaEX0017101 @ hg19
Exon Skipping
Gene
ENSG00000121898 | CPXM2
Description
carboxypeptidase X (M14 family), member 2 [Source:HGNC Symbol;Acc:26977]
Coordinates
chr10:125539683-125558715:-
Coord C1 exon
chr10:125558631-125558715
Coord A exon
chr10:125557492-125557642
Coord C2 exon
chr10:125539683-125539771
Length
151 bp
Sequences
Splice sites
3' ss Seq
TCTCCCATGAGCATAAATAGATA
3' ss Score
-3.78
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGTGACTGGGTGACATCCTATAAGGTCATGGTGAGCAATGACAGCCACACGTGGGTCACTGTTAAGAATGGATCTGGAGACATG
Seq A exon
ATATTTGAGGGAAACAGTGAGAAGGAGATCCCTGTTCTCAATGAGCTACCCGTCCCCATGGTGGCCCGCTACATCCGCATAAACCCTCAGTCCTGGTTTGATAATGGGAGCATCTGCATGAGAATGGAGATCCTGGGCTGCCCACTGCCAG
Seq C2 exon
ATCCTAATAATTATTATCACCGCCGGAACGAGATGACCACCACTGATGACCTGGATTTTAAGCACCACAATTATAAGGAAATGCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121898_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.208
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(19.9=100)
A:
PF0075420=F5_F8_type_C=PD(30.5=84.3)
C2:
PF0024619=Peptidase_M14=PU(0.6=6.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGACTGGGTGACATCCTA
R:
GGCGCATTTCCTTATAATTGTGGT
Band lengths:
172-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)