MmuEX0012914 @ mm9
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:48124324-48190956:-
Coord C1 exon
chr15:48190844-48190956
Coord A exon
chr15:48145345-48145656
Coord C2 exon
chr15:48124324-48124401
Length
312 bp
Sequences
Splice sites
3' ss Seq
AGTGCTACTGTGTCCCACAGGTT
3' ss Score
8.79
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTTATCTGGAATGAATATACCACCACCAATTATCAGCAACAAAAACTGGCTCAGACTGCATTTTGTTACAGACAGCAATCACCGCTACCGAGGATTTAGTGCTCCCTACCAAG
Seq A exon
GTTCTTCTCCATTGACCCTCACTGCCTCCATTGGTGAGTTAGAGGAGCATATCAGGACTGCCACTGGTGCTATTGATGTTGCTAGCACACCTGCAGATGTTACTGTATCCAGTGTTACAGCTGTCACCAGCCATAGACTTTCCGAGGAACAGCGAGTGCAAGTAAGGAGTCTCAGTGATTCAGGTCTGGATCCCAACACACCCGAGGACCAGCTTTCTCCTCATCAAGCAGATACACAAAGTACAAGCAGAAGACCACGAAATGCTGAACAGATAGAAAGAACTAAAGAGCTTGCAGTTGTTACTCATAGAG
Seq C2 exon
TGAAAAAGGCCATAGATTTTAAATCTAGAGGATTTAAGTTGTTTCCAGGGAAAGACAACAGCAACAAGTTTTCTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.645 C2=0.044
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(35.3=92.3)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATCTGGAATGAATATACCACCACC
R:
AGAGAGAAAACTTGTTGCTGTTGT
Band lengths:
190-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: