GgaEX1017866 @ galGal4
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr2:133126407-133166547:-
Coord C1 exon
chr2:133166435-133166547
Coord A exon
chr2:133147360-133147668
Coord C2 exon
chr2:133126407-133126494
Length
309 bp
Sequences
Splice sites
3' ss Seq
TGCTACTGTGTGTCCCACAGGTT
3' ss Score
11.46
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
GCTCTCTGGAATGAATATACCTCCTCCTGTTATCAGCAACAAAAATTGGCTTAGACTACGTTTTGTAACTGACAGCAATCACCGATACCGTGGATTTAGTGCTCATTATCAAG
Seq A exon
GTTCTTCCACTTTGATCAAAACTGCCTCCACTGGTGAGTTAGAAGAGCCTATTGCGGCCACTCCTGGTGCTATTACTGTTGCTAGCACATCTGCAGATGTTACTGTATCCAGTGCAGTGACCATCCATAGACAACATCCTGAAGAACAACAAGTGCAAGCTATGAATGTAAGAAAATCAGTTCTGGAGTCGGCCTCTTCCAAAGAAGCACTCTCCCTTCATCAAGCAAACTTACAAAGAACAAGAAGACGACCAAGAAAAGCTGAGCAAATAGAAAGAACTAAAGAACTTGCAGTTGTTACTCATAGAG
Seq C2 exon
TAAATGAGGGAGGTATTAAACAGGCATCCAATTTGTGTCCAGATCCCGGAGAACCAGAAAATGGAAAACGGATAGGCTCAGACTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.606 C2=0.450
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(35.3=92.3)
A:
NO
C2:
PF0008415=Sushi=PU(29.3=56.7)
Main Inclusion Isoform:
ENSGALT00000025958fB6510
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCTGGAATGAATATACCTCCT
R:
AAGTCTGAGCCTATCCGTTTTCC
Band lengths:
198-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]