HsaEX0017524 @ hg19
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:19291]
Coordinates
chr8:113966913-114031408:-
Coord C1 exon
chr8:114031296-114031408
Coord A exon
chr8:113988066-113988377
Coord C2 exon
chr8:113966913-113966990
Length
312 bp
Sequences
Splice sites
3' ss Seq
AGTGCTACTGTGTCCCACAGGTT
3' ss Score
8.79
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTTATCTGGAATGAATATACCACCACCAATTATCAGCAACAAAAACTGGCTCAGACTGCATTTTGTTACAGACAGCAATCATCGATACCGTGGATTTAGTGCTCCCTATCAAG
Seq A exon
GTTCTTCTACATTGACCCACACTACCTCCACTGGTGAGTTAGAGGAGCATAACAGGACTACCACTGGTGCTATTGCTGTTGCTAGCACACCTGCAGATGTTACTGTATCCAGTGTTACAGCTGTCACCATCCATAGACTTTCCGAGGAACAGCGAGTGCAAGTTACGAGTCTCAGAAATTCAGGTCTGGACCCCAACACGTCCAAGGACGGGCTCTCTCCTCATCCAGCAGATACACAAAGTACCAGGAGAAGACCAAGACATGCTGAACAGATAGAAAGAACTAAAGAGCTTGCAGTTGTTACTCATAGAG
Seq C2 exon
TGAAAAAGGCCATAGATTTTAAATCTAGAGGATTTAAATTGTTTCCAGGGAAAGACAACAGCAACAAGTTTTCTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.752 C2=0.049
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(35.3=92.3)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATCTGGAATGAATATACCACCACC
R:
AGATAGAAAACTTGTTGCTGTTGTCT
Band lengths:
190-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)