HsaEX0017525 @ hg19
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:19291]
Coordinates
chr8:113960019-113988377:-
Coord C1 exon
chr8:113988066-113988377
Coord A exon
chr8:113966913-113966990
Coord C2 exon
chr8:113960019-113960106
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTTTTCTTAACTAGTGA
3' ss Score
7.72
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GTTCTTCTACATTGACCCACACTACCTCCACTGGTGAGTTAGAGGAGCATAACAGGACTACCACTGGTGCTATTGCTGTTGCTAGCACACCTGCAGATGTTACTGTATCCAGTGTTACAGCTGTCACCATCCATAGACTTTCCGAGGAACAGCGAGTGCAAGTTACGAGTCTCAGAAATTCAGGTCTGGACCCCAACACGTCCAAGGACGGGCTCTCTCCTCATCCAGCAGATACACAAAGTACCAGGAGAAGACCAAGACATGCTGAACAGATAGAAAGAACTAAAGAGCTTGCAGTTGTTACTCATAGAG
Seq A exon
TGAAAAAGGCCATAGATTTTAAATCTAGAGGATTTAAATTGTTTCCAGGGAAAGACAACAGCAACAAGTTTTCTATCT
Seq C2 exon
TAAATGAGGGAGGTATTAAAACAGCTTCCAATTTATGCCCAGATCCAGGAGAACCAGAAAATGGGAAGAGAATCGGATCAGATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796_MULTIEX1-2/2=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.752 A=0.049 C2=0.567
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008415=Sushi=PU(29.3=56.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACGGGCTCTCTCCTCAT
R:
TCTGGTTCTCCTGGATCTGGG
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)