GgaEX0023751 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139305484-139346443:-
Coord C1 exon
chr2:139346331-139346443
Coord A exon
chr2:139312164-139312241
Coord C2 exon
chr2:139305484-139305571
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGTTTTTAACTAGTGA
3' ss Score
7.22
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GCTCTCTGGAATGAATATACCTCCTCCTGTTATCAGCAACAAAAATTGGCTTAGACTACGTTTTGTAACTGACAGCAATCACCGATACCGTGGATTTAGTGCTCATTATCAAG
Seq A exon
TGAAAAAGGCCATAGATTTTAAATCTAGAGGATTTAAATTGTTTCCAGGGAAAGACAACAGCAACAAGTTTTCTATCT
Seq C2 exon
TAAATGAGGGAGGTATTAAACAGGCATCCAATTTGTGTCCAGATCCCGGAGAACCAGAAAATGGAAAACGGATAGGCTCAGACTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'3-5,'3-4,5-5
Average complexity
C1
Mappability confidence:
89%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.383
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(35.3=92.3)
A:
NO
C2:
PF0008415=Sushi=PU(29.3=56.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCCTGTTATCAGCAACA
R:
GTCTGAGCCTATCCGTTTTCCA
Band lengths:
177-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]