DreEX0003313 @ danRer10
Exon Skipping
Gene
ENSDARG00000077920 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr19:45019010-45070506:-
Coord C1 exon
chr19:45070394-45070506
Coord A exon
chr19:45043207-45043284
Coord C2 exon
chr19:45019010-45019097
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCCCCCTTTAACTAGTGA
3' ss Score
7.69
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GCTCTCCGGCATGAATGTCCCATCTCCTATTGTTAGCAACAAGAACTGGCTGAGACTTCACTTTGTTACTGACAGCAACCATCGATACAAAGGCTTCAGCGCTCATTATCAAG
Seq A exon
TGAAACGGTCTGTAGATTTCAAATCTAGAGGAGTAAAATTATTCCCTGGCAAAGACAACAGCAACAAGTTTTCTATCT
Seq C2 exon
TAAATGAAGGAGGAATCAAACAGGCTTCAAACTCGTGTCCGGACCCAGGGGAACCGGAAAATGGCAAACGCATTGGCAACGACTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077920_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.600
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(35.3=94.7)
A:
NO
C2:
PF0008415=Sushi=PU(27.6=53.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCATGAATGTCCCATCTCC
R:
AATGCGTTTGCCATTTTCCGG
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]