RnoEX0003327 @ rn6
Exon Skipping
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:87543252-87618904:-
Coord C1 exon
chr7:87618792-87618904
Coord A exon
chr7:87548658-87548735
Coord C2 exon
chr7:87543252-87543339
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTTTTCTTAACTAGTGA
3' ss Score
7.72
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GTTATCTGGAATGAATATACCACCACCAATTATCAGCAACAAAAACTGGCTCAGACTGCATTTTGTTACGGACAGCAATCACCGTTACCGTGGATTTAGTGCTCCCTACCAAG
Seq A exon
TGAAAAAGGCCATAGATTTTAAATCTAGAGGATTTAAGTTGTTTCCAGGGAAAGACAACAGCAACAAGTTTTCTCTCT
Seq C2 exon
TAAATGAAGGAGGTATTAAAACAGCTTCCAACTTATGTCCAGATCCTGGAGAACCAGAAAATGGGAAGAGAATTGGATCAGATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCACCAATTATCAGCAACA
R:
TTCTCTTCCCATTTTCTGGTTCTCC
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]