MmuEX0013201 @ mm9
Exon Skipping
Gene
ENSMUSG00000024194 | Cuta
Description
cutA divalent cation tolerance homolog (E. coli) [Source:MGI Symbol;Acc:MGI:1914925]
Coordinates
chr17:27075829-27076413:-
Coord C1 exon
chr17:27076396-27076413
Coord A exon
chr17:27076262-27076313
Coord C2 exon
chr17:27075829-27076037
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTTTTCTCTACCAGCGC
3' ss Score
10.3
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTCACGTGGCTACTGCAG
Seq A exon
CGCGGGCTGCATGAACTGGGGGCGGGCGCCCGGCGTCTTGCTCGGCGGAGGG
Seq C2 exon
GCCACTCTGCTCCTGTCGTTTCTTTGGATGCCAGCGCTACTGCCGGTGGCTTCCCGCCTTCTGTTGCTACCCCGAGCTCTGCTGTCAATGGCTTCTGGAAGCCCTCCGTCCCAGCCCCCTCCGGCCTCGGGCTCCGGCTACGTTCCAGGATCAGTCTCTGCAGCCTTTGTCACTTGTCCCAACGAAAAAGTCGCCAAGGAGATCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024194_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.103 C2=0.204
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0309110=CutA1=PU(17.6=25.7),PF0079315=DAHP_synth_1=PU(11.8=12.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACGTGGCTACTGCAG
R:
CTGGGACGGAGGGCTTCC
Band lengths:
132-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types