BtaEX0010436 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001635 | CUTA
Description
Bos taurus cutA divalent cation tolerance homolog (E. coli) (CUTA), mRNA. [Source:RefSeq mRNA;Acc:NM_001075379]
Coordinates
chr23:7535105-7539963:-
Coord C1 exon
chr23:7535705-7539963
Coord A exon
chr23:7535572-7535623
Coord C2 exon
chr23:7535105-7535313
Length
52 bp
Sequences
Splice sites
3' ss Seq
ATATTCAACCCTCCTCCCAGCAT
3' ss Score
5.24
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
CAATCTCCTAAGACCCTGTCATTCCTTAAGGCCTCAGGAACAGGGCTGTTACTAGGCACATTCCGGGGTTTAAGGATGAGCCCCGACTCCACAACCTGACGCATAGATTCTGCGGGGTCTCCAGCCCCCCTTTCCCAGCGCTAGGGCTCTCATCATGTGGCCTGCGGGGCTGCCCCGCGATTGGTCTCTTCGCGTAGTTCATTGAGGTACCGCTGCCTGAGGCGACCCGCCCCCTCACGTGACAGTGGAACGCCGCTGCGGCTCGCCTCAGCCTGCAATTGGCCGTTTCCGGTTTACACGGAAATGGGCGCTCCATTTCCGTGCACGTCTGCAGATCCAGGTGTTGATTGGTTGGATCCTTCTTCGCCCCTCCCGCCCCCGGAGGCGGGACAAACCGGGCCACGTGGGAGCAAGGATTGGCTGGCTTTGGAGGTTAGGGTTGTCCGGCTTCTACTGTCACGTGGTCTGCGCTGTTTTCTTATCACGTGGCTGCTGCCCAG
Seq A exon
CATAGGCTGCATGAGGCGGGGGCGGGCTCCCACATTCCTGCTCGGCGGAGGG
Seq C2 exon
GCCGCTCTGCTGCTGTCGCTGTTTTGGATGCCGACACTGCTGCCTGCAGCCTCTCGCCTTCTGTTGCTACCCCGAGCCCTGCTGTCCATGGCTTCAGGAAGTCCCCCGGCCCAGCCCTCGTCGGCCTCGGGCTCCGCCTATGTCCCCGGCTCGGTCTCTGCGGCCTTTGTCACCTGCCCCAACGAGAAGGTCGCCAAGGAGATCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001635_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0309110=CutA1=PU(17.6=25.7),PF0079315=DAHP_synth_1=PU(11.8=12.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGTCCGGCTTCTACTGTC
R:
GTAGCAACAGAAGGCGAGAGG
Band lengths:
133-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development