RnoEX0025523 @ rn6
Exon Skipping
Gene
ENSRNOG00000000481 | Cuta
Description
cutA divalent cation tolerance homolog [Source:RGD Symbol;Acc:1303306]
Coordinates
chr20:5532963-5533600:-
Coord C1 exon
chr20:5533522-5533600
Coord A exon
chr20:5533387-5533438
Coord C2 exon
chr20:5532963-5533171
Length
52 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTTTTCTCTACCAGCGC
3' ss Score
10.45
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
CAGGTCTGGAGATTCTGGGAAGGCAGGGCTGCTCCTGTCACGTGGTGTGCACTGTTTTCTCGTCACGTGGCTTCTGCAG
Seq A exon
CGCGGGCTGCATGAACTGGGGGCGGGCGCTCGGCGTCCTACTCGGCGGAGGG
Seq C2 exon
GCCACGCTGCTCCTGTCGTTTCTTTGCATGCCTGCCCTACTGCCGGTGGCTTCCCGCCTTCTATTGCTACCCCGAGCTCTGCTGTCCATGGCTTCTGGAAGCCCTCCGTCCCAGCCGTCGCCGGCCTCGGGCTCCGGCTACGTTCCAGGATCAGTCTCTGCAGCCTTTGTCACTTGTCCGAACGAAAAAGTCGCCAAGGAGATTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000481-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.177
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0309110=CutA1=PU(17.6=25.7),PF0079315=DAHP_synth_1=PU(11.8=12.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGTGTGCACTGTTTTCT
R:
CAGAAGCCATGGACAGCAGAG
Band lengths:
137-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]