MmuEX0013201 @ mm10
Exon Skipping
Gene
ENSMUSG00000024194 | Cuta
Description
cutA divalent cation tolerance homolog [Source:MGI Symbol;Acc:MGI:1914925]
Coordinates
chr17:26938884-26939468:-
Coord C1 exon
chr17:26939451-26939468
Coord A exon
chr17:26939317-26939368
Coord C2 exon
chr17:26938884-26939092
Length
52 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTTTTCTCTACCAGCGC
3' ss Score
10.3
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTCACGTGGCTACTGCAG
Seq A exon
CGCGGGCTGCATGAACTGGGGGCGGGCGCCCGGCGTCTTGCTCGGCGGAGGG
Seq C2 exon
GCCACTCTGCTCCTGTCGTTTCTTTGGATGCCAGCGCTACTGCCGGTGGCTTCCCGCCTTCTGTTGCTACCCCGAGCTCTGCTGTCAATGGCTTCTGGAAGCCCTCCGTCCCAGCCCCCTCCGGCCTCGGGCTCCGGCTACGTTCCAGGATCAGTCTCTGCAGCCTTTGTCACTTGTCCCAACGAAAAAGTCGCCAAGGAGATCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024194_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.191
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0309110=CutA1=PU(17.6=25.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACGTGGCTACTGCAG
R:
CTGGGACGGAGGGCTTCC
Band lengths:
132-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types