Special

MmuEX0013338 @ mm9

Exon Skipping

Gene
ENSMUSG00000014372 | Cyp2d10
Description
cytochrome P450, family 2, subfamily d, polypeptide 10 [Source:MGI Symbol;Acc:MGI:88602]
Coordinates
chr15:82234533-82235825:-
Coord C1 exon
chr15:82235665-82235825
Coord A exon
chr15:82234858-82235034
Coord C2 exon
chr15:82234533-82234674
Length
177 bp
Sequences
Splice sites
3' ss Seq
GACTTACTGTATTCTCACAGGTT
3' ss Score
8.32
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGCAGCCCATCAATCCCAACACCATGCTGAACAACGCTGTGTGCAATGTGATTGCATCTCTCATTTTTGCCCGTCGCTTTGAATATGAAGACCCTTACCTCATCAGGATGCAGAAAGTACTGGAAGATAGTTTGACAGAAATCTCTGGCTTAATTCCTGAG
Seq A exon
GTTCTTAATATGTTCCCCATACTCCTGCGCATCCCAGGACTGCCTGGGAAGGTCTTCCAAGGTCAGAAGTCCTTACTGGCCATAGTGGAGAATCTGTTGACTGAGAATAGGAACACCTGGGACCCTGACCAGCCACCCCGAAATTTGACTGATGCCTTCCTGGCAGAGATAGAGAAG
Seq C2 exon
GTAAAGGGGAATGCTGAGAGCAGCTTCAATGATGAGAACCTGCGCATGGTTGTGCTAGACCTGTTCACTGCAGGGATGGTGACCACCTCAACCACACTGTCCTGGGCCCTGCTGCTCATGATCCTGCATCCGGATGTGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014372_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.169 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0006717=p450=FE(11.5=100)

							
A:
PF0006717=p450=FE(12.6=100)

							
C2:
PF0006717=p450=FE(10.2=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000072555





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000097951
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr22:42537878-42538054 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr5:113623168-113623344 
Chicken
(galGal4)
chr1:49269090-49269263 
HIGH PSI
GgaEX1018544
(CYP2D6)
Chicken
(galGal3)
chr1:51296106-51296279 
HIGH PSI
GgaEX1018544
(F1NJG4_CHICK)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCCCATCAATCCCAACACCAT

				
R: 
CAGTGTGGTTGAGGTGGTCAC

				
Band lengths: 
256-433

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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