MmuEX0013338 @ mm10
Exon Skipping
Gene
ENSMUSG00000094806 | Cyp2d10
Description
cytochrome P450, family 2, subfamily d, polypeptide 10 [Source:MGI Symbol;Acc:MGI:88602]
Coordinates
chr15:82404103-82405395:-
Coord C1 exon
chr15:82405235-82405395
Coord A exon
chr15:82404428-82404604
Coord C2 exon
chr15:82404103-82404244
Length
177 bp
Sequences
Splice sites
3' ss Seq
GACTTACTGTATTCTCACAGGTT
3' ss Score
8.32
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGCAGCCCATCAATCCCAACACCATGCTGAACAACGCTGTGTGCAATGTGATTGCATCTCTCATTTTTGCCCGTCGCTTTGAATATGAAGACCCTTACCTCATCAGGATGCAGAAAGTACTGGAAGATAGTTTGACAGAAATCTCTGGCTTAATTCCTGAG
Seq A exon
GTTCTTAATATGTTCCCCATACTCCTGCGCATCCCAGGACTGCCTGGGAAGGTCTTCCAAGGTCAGAAGTCCTTACTGGCCATAGTGGAGAATCTGTTGACTGAGAATAGGAACACCTGGGACCCTGACCAGCCACCCCGAAATTTGACTGATGCCTTCCTGGCAGAGATAGAGAAG
Seq C2 exon
GTAAAGGGGAATGCTGAGAGCAGCTTCAATGATGAGAACCTGCGCATGGTTGTGCTAGACCTGTTCACTGCAGGGATGGTGACCACCTCAACCACACTGTCCTGGGCCCTGCTGCTCATGATCCTGCATCCGGATGTGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000094806_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.169 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.5=100)
A:
PF0006717=p450=FE(12.6=100)
C2:
PF0006717=p450=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATCAATCCCAACACCAT
R:
CAGTGTGGTTGAGGTGGTCAC
Band lengths:
256-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types