RnoEX0025881 @ rn6
Exon Skipping
Gene
ENSRNOG00000029179 | Cyp2d1
Description
cytochrome P450, family 2, subfamily d, polypeptide 1 [Source:RGD Symbol;Acc:708427]
Coordinates
chr7:123625986-123628185:-
Coord C1 exon
chr7:123628025-123628185
Coord A exon
chr7:123627223-123627399
Coord C2 exon
chr7:123625986-123626127
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTGTGTCTCTCAAAGGTT
3' ss Score
10.4
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GGCAGTCCATCAATCCCAAGGCCATGCTGAACAAAGCCTTGTGTAATGTGATCGCATCCCTCATTTTTGCCCGTCGCTTTGAATATGAAGACCCTTACCTCATCAGGATGGTGAAACTAGTGGAAGAGAGTTTGACAGAAGTCTCTGGTTTCATTCCTGAG
Seq A exon
GTTCTTAACACGTTCCCAGCACTGCTGCGCATCCCAGGGCTGGCTGACAAGGTCTTCCAAGGTCAGAAGACCTTCATGGCCTTACTGGATAACCTGCTGGCTGAGAACAGGACCACCTGGGACCCTGCCCAGCCACCCCGAAATCTGACTGATGCCTTCCTGGCTGAGGTGGAGAAG
Seq C2 exon
GGGACGACCCTCATCATCAACCTGTCGTCCGTGCTGAAGGATGAGACCGTCTGGGAGAAGCCCCACCGCTTCCATCCAGAACACTTCCTGGATGCCCAGGGCAACTTTGTGAAGCATGAGGCCTTCATGCCATTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029179_MULTIEX1-3/6=2-6
Average complexity
C3
Mappability confidence:
92%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.5=100)
A:
PF0006717=p450=FE(12.6=100)
C2:
PF0006717=p450=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCATCAATCCCAAGGCC
R:
GGCATCCAGGAAGTGTTCTGG
Band lengths:
255-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]