Special

MmuEX0013348 @ mm9

Exon Skipping

Gene
ENSMUSG00000081225 | Cyp2j12-ps
Description
cytochrome P450, family 2, subfamily j, polypeptide 12 [Source:MGI Symbol;Acc:MGI:3717097]
Coordinates
chr4:95789205-95807733:-
Coord C1 exon
chr4:95807524-95807733
Coord A exon
chr4:95799686-95799848
Coord C2 exon
chr4:95789205-95789354
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTATTGAAATGTTTTTTCAGTTT
3' ss Score
7.01
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
ATGCTTGCTACTGAGGACACCTTTGAGACAGCCATCTGGGCACTGCTTCATTTCAAGACTCTGGTGCTTGCTGCTGTCACCTTCATGCTCTTGGCTCACTATCTCAAAACCCAGCGACCCAAGAACTACCCACCAGGACCCTGGCGCCTGCCTTTTGTGGGCAACTTATTCCAGTTGGATTTAGAGCAGCCACATGTAGTGATTCAGCAG
Seq A exon
TTTGTGAAGAAGTATGGAAACCTAACTAGCCTGGACTTTGGTAATATTCCTTCAGTAATAATAACTGGACTGCCCTTGATCAAAGAAGTCTTCACTAACATGGAACAAAACTTTTTGAATCGTCCTATTACACCTATCAGAAAACGTGTCTTTAATAACAATG
Seq C2 exon
GATTGATCATTTCCAATGGCCAGACATGGAAGGAGCAAAGAAGGTTCGCACTGATGACACTCAAGAACTTTGGATTAGGGAAAAAGAGCTTGGAGCAGCGCATACAGAAGGAGGCTGACTGTCTTGTGGAGGCCATAGGAGAGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000081225_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
NonCoding





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0006717=p450=PU(5.7=37.1)

							
A:
PF0006717=p450=FE(11.9=100)

							
C2:
PF0006717=p450=FE(11.0=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000133811





     
                   









    
Main Skipping Isoform:
ENSMUSP00000134394





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr1:59915938-59916100 
HIGH PSI
HsaEX0018288
(CYP2J2)
Human
(hg19)
chr1:60381610-60381772 
HIGH PSI
HsaEX0018288
(CYP2J2)
Rat
(rn6)
chr5:115095069-115095231 
HIGH PSI
RnoEX6022390
(Cyp2j10)
Cow
(bosTau6)
chr3:86614333-86614495 
HIGH PSI
BtaEX6017456
([1])
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr8:27492534-27492696 
Zebrafish
(danRer10)
chr20:25711926-25712088 
ALTERNATIVE
DreEX0025428
(cyp2j20)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGTCACCTTCATGCTCTTGGC

				
R: 
TTCTGTATGCGCTGCTCCAAG

				
Band lengths: 
245-408

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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