MmuEX0013382 @ mm9
Exon Skipping
Gene
ENSMUSG00000028712 | Cyp4a31
Description
cytochrome P450, family 4, subfamily a, polypeptide 31 [Source:MGI Symbol;Acc:MGI:3028580]
Coordinates
chr4:115243850-115247571:+
Coord C1 exon
chr4:115243850-115243983
Coord A exon
chr4:115247305-115247369
Coord C2 exon
chr4:115247512-115247571
Length
65 bp
Sequences
Splice sites
3' ss Seq
TATTCCTATCTGCCCCACAGGTG
3' ss Score
10.67
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GGATCACCTAGACCAGATTCCCTATACCACAATGTGCATCAAGGAGGCCCTAAGGCTCTACCCACCTGTCCCAAGCATTGGCAGAGAACTCAGTACATCTGTCACCTTTCCTGATGGATGTTCTTTACCTAAAG
Seq A exon
GTGTCCAGGTCACACTCTCCATTTATGGTCTCCACCACAACCCGAAGGTGTGGCCAAACCCAGAG
Seq C2 exon
GTTTGCACCAGACTCTCCCCGACACAGCCACTCATTCCTGCCCTTCTCAGGAGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028712-'10-11,'10-9,11-11
Average complexity
S
Mappability confidence:
100%=50=33%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.3=100)
A:
PF0006717=p450=FE(4.6=100)
C2:
PF0006717=p450=PD(0.3=5.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAATGTGCATCAAGGAGGC
R:
CTGGCTCCTCCTGAGAAGGG
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: