HsaEX0018321 @ hg19
Exon Skipping
Gene
ENSG00000187048 | CYP4A11
Description
cytochrome P450, family 4, subfamily A, polypeptide 11 [Source:HGNC Symbol;Acc:2642]
Coordinates
chr1:47398433-47400231:-
Coord C1 exon
chr1:47400125-47400231
Coord A exon
chr1:47398655-47398719
Coord C2 exon
chr1:47398433-47398509
Length
65 bp
Sequences
Splice sites
3' ss Seq
GTTTCCAACCTGCACCACAGGTA
3' ss Score
6.37
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
ACCAAGTGATCCAACTGAGGAAGGCTCAACTACAGAAGGAGGGGGAGCTGGAGAAGATCAAGAGGAAGAGGCATTTGGATTTTCTGGATATCCTCCTCTTGGCCAAA
Seq A exon
GTATCATGGTCCTCCTCTCCATTTATGGCCTTCACCACAACCCAAAAGTGTGGCCCAACCCAGAG
Seq C2 exon
GTGTTTGACCCTTTCCGTTTTGCACCGGGTTCTGCTCAACACAGCCACGCTTTCCTGCCCTTCTCAGGAGGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187048_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.221 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(5.3=16.2)
A:
PF0006717=p450=FE(4.6=100)
C2:
PF0006717=p450=FE(5.5=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACTGAGGAAGGCTCAAC
R:
TGATCCTCCTGAGAAGGGCAG
Band lengths:
173-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)