Special

MmuEX0013385 @ mm9

Exon Skipping

Gene
ENSMUSG00000063929 | Cyp4a32
Description
cytochrome P450, family 4, subfamily a, polypeptide 32 [Source:MGI Symbol;Acc:MGI:3717148]
Coordinates
chr4:115273580-115282356:+
Coord C1 exon
chr4:115273580-115273768
Coord A exon
chr4:115279250-115279377
Coord C2 exon
chr4:115282232-115282356
Length
128 bp
Sequences
Splice sites
3' ss Seq
CACACCTCTCTCTGGCCCAGGGT
3' ss Score
7.53
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
ATGAGTGTCTCTGCTCTAAGCCCGACCCGATTTGCAGACAGCCTCTCTGGCTTCCTCCAAGTGGCCTCTGTGCTCGGTCTGCTCCTGCTGCTGGTGAAAGCTGTCCAGTTCTACCTGCACAGGAAATGGCTACTCAAGGCTCTCCAGCAGTTCCCATCACCTCCTTTTCACTGGTTCTTTGGGCATGAG
Seq A exon
GGTATGGTTTGCTCTTGTTGAATGGACAGCCATGGTTCCAGCACCGGAGGATGCTAACCCCAGCCTTCCACTATGACATTCTGAAACCCTATGTGAAAAACATGGCTGACTCCATTCGATTGATGCTA
Seq C2 exon
GACAAATGGGAAAGGCTGGCTGGTCAGGACTCCTCAATAGAGATTTTTCAACACATCTCCTTAATGACCCTAGACACTGTCATGAAGTGTGCCTTCAGCCACAAGGGCAGTGTTCAGGTGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063929_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0006717=p450=PU(2.6=19.0)

							
A:
PF0006717=p450=FE(9.3=100)

							
C2:
PF0006717=p450=FE(9.0=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000081369





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr1:47607780-47607907 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr3:99923343-99923470 
Chicken
(galGal4)
chr8:20775307-20775434 
HIGH PSI
GgaEX0026214
([1])
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr16:4807144-4807271 
HIGH PSI
DreEX0025518
(cyp4t8)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCTCTCTGGCTTCCTCCAAGT

				
R: 
AGGCACACTTCATGACAGTGT

				
Band lengths: 
242-370

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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