MmuEX0013385 @ mm10
Exon Skipping
Gene
ENSMUSG00000063929 | Cyp4a32
Description
cytochrome P450, family 4, subfamily a, polypeptide 32 [Source:MGI Symbol;Acc:MGI:3717148]
Coordinates
chr4:115602928-115609751:+
Coord C1 exon
chr4:115602928-115602972
Coord A exon
chr4:115606645-115606772
Coord C2 exon
chr4:115609627-115609751
Length
128 bp
Sequences
Splice sites
3' ss Seq
CACACCTCTCTCTGGCCCAGGGT
3' ss Score
7.53
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
ATCCAAAGGCTAATGGTATCTACAGATTGCTAGCTCCTTGGATTG
Seq A exon
GGTATGGTTTGCTCTTGTTGAATGGACAGCCATGGTTCCAGCACCGGAGGATGCTAACCCCAGCCTTCCACTATGACATTCTGAAACCCTATGTGAAAAACATGGCTGACTCCATTCGATTGATGCTA
Seq C2 exon
GACAAATGGGAAAGGCTGGCTGGTCAGGACTCCTCAATAGAGATTTTTCAACACATCTCCTTAATGACCCTAGACACTGTCATGAAGTGTGCCTTCAGCCACAAGGGCAGTGTTCAGGTGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063929_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(16.1=100)
A:
PF0006717=p450=FE(9.3=100)
C2:
PF0006717=p450=FE(9.0=100)
Main Skipping Isoform:
ENSMUST00000084342fB8464
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAAAGGCTAATGGTATCTACAGA
R:
CCATCCACCTGAACACTGCC
Band lengths:
170-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types