RnoEX0025976 @ rn6
Exon Skipping
Gene
ENSRNOG00000009597 | Cyp4a1
Description
cytochrome P450, family 4, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:68945]
Coordinates
chr5:134495045-134500034:+
Coord C1 exon
chr5:134495045-134495089
Coord A exon
chr5:134495469-134495596
Coord C2 exon
chr5:134499928-134500034
Length
128 bp
Sequences
Splice sites
3' ss Seq
CACACCTCTCTCCTGCCCAGGAT
3' ss Score
8.34
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
ATCCAAAGGCCAATGGCGTCTACAGATTGCTAGCTCCTTGGATCG
Seq A exon
GATATGGTTTGCTCTTGCTGAATGGACAACCGTGGTTCCAGCACCGGCGAATGCTAACCCCAGCCTTCCACTATGACATTCTGAAACCCTATGTAAAAAACATGGCTGACTCCATTCGACTGATGCTA
Seq C2 exon
ATGGTGTGATCAAGCTAAGGAAGGATCAGCTGCAGAATGCGGGAGAGCTGGAAAAGGTCAAGAAGAAAAGACGTTTGGATTTTCTGGACATCCTCTTACTTGCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009597_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.3=100)
A:
PF0006717=p450=FE(10.4=100)
C2:
PF0006717=p450=FE(7.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGTCTACAGATTGCTAGC
R:
TCTGGCAAGTAAGAGGATGTCCA
Band lengths:
139-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]