MmuEX0013721 @ mm10
Exon Skipping
Gene
ENSMUSG00000026401 | Cd55b
Description
CD55 molecule, decay accelerating factor for complement B [Source:MGI Symbol;Acc:MGI:104849]
Coordinates
chr1:130388537-130414240:-
Coord C1 exon
chr1:130414049-130414240
Coord A exon
chr1:130411393-130411539
Coord C2 exon
chr1:130388537-130388729
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTACATTGTTTTCTTTATAGAGG
3' ss Score
7.74
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
AAATATTTTGTCCAGACCCACCAAAAATCAACAATGGAATAATGCGAGGGGAAAGCGATTCTTATAAATATAGCCAGGTGGTCATTTATTCATGTGACAAAGGCTTCATCCTGTTTGGAAATTCTACCATATATTGTACTGTGAGCAAGTCTGATGTAGGACAATGGAGCAGTCCACCACCCCAGTGTATAG
Seq A exon
AGGAATCTAAGGTCCCAATTAAGAAACCAGTAGTTAATGTTCCAAGTACAGGAATCCCCTCAACGCCTCAGAAACCCACAACAGAAAGTGTTCCAAATCCAGGAGACCAACCAACTCCTCAGAAACCTTCCACAGTTAAAGTTCCAG
Seq C2 exon
GATTTGTTGCTGTTATTGCAATGATTGATAGCCTAATTATAGTCAAAACTCTTTGGACTATTTTAAGTCCAAACAGAAGGTCTGACTTTCAAGGAAAGGAGAGGAAGGATGTCTCAAAGTAAGAAGAGAGCAAGAATCCAGTCTCCACCTTTTCAACCTGTTTGGGTGTGTGCTCTATGAATTAAATGGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026401_MULTIEX1-2/4=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.800 C2=0.287
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.3)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACAAAGGCTTCATCCTGT
R:
AGGTGGAGACTGGATTCTTGCT
Band lengths:
250-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types