Special

MmuEX0013721 @ mm9

Exon Skipping

Gene
ENSMUSG00000026401 | Daf2
Description
decay accelerating factor 2 [Source:MGI Symbol;Acc:MGI:104849]
Coordinates
chr1:132285114-132310817:-
Coord C1 exon
chr1:132310626-132310817
Coord A exon
chr1:132307970-132308116
Coord C2 exon
chr1:132285114-132285306
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTACATTGTTTTCTTTATAGAGG
3' ss Score
7.74
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
AAATATTTTGTCCAGACCCACCAAAAATCAACAATGGAATAATGCGAGGGGAAAGCGATTCTTATAAATATAGCCAGGTGGTCATTTATTCATGTGACAAAGGCTTCATCCTGTTTGGAAATTCTACCATATATTGTACTGTGAGCAAGTCTGATGTAGGACAATGGAGCAGTCCACCACCCCAGTGTATAG
Seq A exon
AGGAATCTAAGGTCCCAATTAAGAAACCAGTAGTTAATGTTCCAAGTACAGGAATCCCCTCAACGCCTCAGAAACCCACAACAGAAAGTGTTCCAAATCCAGGAGACCAACCAACTCCTCAGAAACCTTCCACAGTTAAAGTTCCAG
Seq C2 exon
GATTTGTTGCTGTTATTGCAATGATTGATAGCCTAATTATAGTCAAAACTCTTTGGACTATTTTAAGTCCAAACAGAAGGTCTGACTTTCAAGGAAAGGAGAGGAAGGATGTCTCAAAGTAAGAAGAGAGCAAGAATCCAGTCTCCACCTTTTCAACCTGTTTGGGTGTGTGCTCTATGAATTAAATGGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026401_MULTIEX1-2/4=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.108 A=0.800 C2=0.304
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0008415=Sushi=WD(100=92.3)

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000027654





     
                   









    
Main Skipping Isoform:
ENSMUSP00000113352





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000108107
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr1:207510205-207510316 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr16:5110816-5110866 
HIGH PSI
BtaEX0007950
(CD55)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGTGACAAAGGCTTCATCCTGT

				
R: 
AGGTGGAGACTGGATTCTTGCT

				
Band lengths: 
250-397

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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