MmuEX0013722 @ mm10
Exon Skipping
Gene
ENSMUSG00000026401 | Cd55b
Description
CD55 molecule, decay accelerating factor for complement B [Source:MGI Symbol;Acc:MGI:104849]
Coordinates
chr1:130409872-130411539:-
Coord C1 exon
chr1:130411393-130411539
Coord A exon
chr1:130410629-130410691
Coord C2 exon
chr1:130409872-130409892
Length
63 bp
Sequences
Splice sites
3' ss Seq
CACTTCTGCTCATATTATAGCAA
3' ss Score
5.5
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AGGAATCTAAGGTCCCAATTAAGAAACCAGTAGTTAATGTTCCAAGTACAGGAATCCCCTCAACGCCTCAGAAACCCACAACAGAAAGTGTTCCAAATCCAGGAGACCAACCAACTCCTCAGAAACCTTCCACAGTTAAAGTTCCAG
Seq A exon
CAACCCAGCATGAACCTGATACCACGACAAGAACATCTACAGACAAAGGAGAGTCTAACTCAG
Seq C2 exon
GTGGTGACCGTTATATATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026401_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.886 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types