MmuEX0013722 @ mm9
Exon Skipping
Gene
ENSMUSG00000026401 | Daf2
Description
decay accelerating factor 2 [Source:MGI Symbol;Acc:MGI:104849]
Coordinates
chr1:132285114-132308116:-
Coord C1 exon
chr1:132307970-132308116
Coord A exon
chr1:132307206-132307268
Coord C2 exon
chr1:132285114-132285306
Length
63 bp
Sequences
Splice sites
3' ss Seq
CACTTCTGCTCATATTATAGCAA
3' ss Score
5.5
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AGGAATCTAAGGTCCCAATTAAGAAACCAGTAGTTAATGTTCCAAGTACAGGAATCCCCTCAACGCCTCAGAAACCCACAACAGAAAGTGTTCCAAATCCAGGAGACCAACCAACTCCTCAGAAACCTTCCACAGTTAAAGTTCCAG
Seq A exon
CAACCCAGCATGAACCTGATACCACGACAAGAACATCTACAGACAAAGGAGAGTCTAACTCAG
Seq C2 exon
GATTTGTTGCTGTTATTGCAATGATTGATAGCCTAATTATAGTCAAAACTCTTTGGACTATTTTAAGTCCAAACAGAAGGTCTGACTTTCAAGGAAAGGAGAGGAAGGATGTCTCAAAGTAAGAAGAGAGCAAGAATCCAGTCTCCACCTTTTCAACCTGTTTGGGTGTGTGCTCTATGAATTAAATGGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026401_MULTIEX1-3/4=2-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.924 C2=0.304
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCAACCAACTCCTCAG
R:
AGTCAGACCTTCTGTTTGGACT
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: