MmuEX0014454 @ mm9
Exon Skipping
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91780915-91782515:-
Coord C1 exon
chr2:91782447-91782515
Coord A exon
chr2:91781122-91781193
Coord C2 exon
chr2:91780915-91781031
Length
72 bp
Sequences
Splice sites
3' ss Seq
GCCACCCTGTCCTCCCTCAGGGC
3' ss Score
10.36
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
CCAACCTTCGTAAGACACCACTGGGTCCACAGACGACGCCAGGATGGCAAGTGTCGGCACTGTGGGAAG
Seq A exon
GGCTTCCAGCAGAAGTTCACCTTCCACAGCAAGGAGATCGTAGCCATCAGCTGCTCCTGGTGCAAACAGGCA
Seq C2 exon
TACCACAGCAAGGTGTCGTGCTTCATGATGCAACAGATTGAGGAACCCTGCTCCCTAGGGGTGCATGCAGCCGTGGTCATCCCACCCACCTGGATCCTGCGGGCCCGGAGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-'13-18,'13-16,15-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(28.3=73.9)
A:
PF0013017=C1_1=FE(38.3=100)
C2:
PF0013017=C1_1=PD(28.3=43.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTAAGACACCACTGGGTCC
R:
GGATCCAGGTGGGTGGGATG
Band lengths:
159-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: