GgaEX1019518 @ galGal3
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25821390-25822382:-
Coord C1 exon
chr5:25822314-25822382
Coord A exon
chr5:25821781-25821852
Coord C2 exon
chr5:25821390-25821506
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTATCCTTCCCTCTGCAGGGT
3' ss Score
12.63
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
CCCATAGTTGTCCGGCATCACTGGGTGCATCGGAGGCGACAGGAGGGGAAATGCCGGCAGTGCGGCAAG
Seq A exon
GGTTTCCAGCAGAAGTTTGCCTTCCACAGTAAGGAGATTGTAGCCATCAGCTGTTCATGGTGCAAGCAAGCG
Seq C2 exon
TATCACAGCAAAGTGTCATGTTTCATGCTGCAACACATCGAAGAGCCCTGCTCATTAGGGGCTCACGCTGCTGTCGTCGTTCCTCCCACCTGGATTTTGCGGGTCCGACGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(28.3=73.9)
A:
PF0013017=C1_1=FE(38.3=100)
C2:
PF0013017=C1_1=PD(28.3=43.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATAGTTGTCCGGCATCAC
R:
GACCCGCAAAATCCAGGTGG
Band lengths:
174-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]