DreEX6000520 @ danRer10
Exon Skipping
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4638996-4640875:-
Coord C1 exon
chr4:4640807-4640875
Coord A exon
chr4:4640227-4640295
Coord C2 exon
chr4:4638996-4639112
Length
69 bp
Sequences
Splice sites
3' ss Seq
TATTTTCTCTGTCCTTGCAGAGT
3' ss Score
11.38
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
CAGAATGTGTTGCGGCACCACTGGGTTCATCGTCGCCGACAGGAGGGAAAATGTCGACAGTGCGGCAAA
Seq A exon
AGTTTTCCACAGAAGTTCTTCCACAGTAAGGAGATCGTGGCCATCAGCTGCTCCTGGTGCAAACAGGCG
Seq C2 exon
TTCCACAACAAGGTGACGTGTTTCATGCTGCATCAGATTGAGGAGCCCTGTTCACTGGGAGCTCACGCCGGGGTCATTGTCCCACCATCCTGGATTATTAAAGTCCGGAAACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(28.8=73.9)
A:
PF0013017=C1_1=FE(37.3=100)
C2:
PF0013017=C1_1=PD(28.8=43.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAATGTGTTGCGGCACCA
R:
ATAATCCAGGATGGTGGGACA
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]