GgaEX1019518 @ galGal4
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
diacylglycerol kinase zeta [Source:RefSeq peptide;Acc:NP_001026363]
Coordinates
chr5:22965967-22966959:-
Coord C1 exon
chr5:22966891-22966959
Coord A exon
chr5:22966358-22966429
Coord C2 exon
chr5:22965967-22966083
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTATCCTTCCCTCTGCAGGGT
3' ss Score
12.63
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
CCCATAGTTGTCCGGCATCACTGGGTGCATCGGAGGCGACAGGAGGGGAAATGCCGGCAGTGCGGCAAG
Seq A exon
GGTTTCCAGCAGAAGTTTGCCTTCCACAGTAAGGAGATTGTAGCCATCAGCTGTTCATGGTGCAAGCAAGCG
Seq C2 exon
TATCACAGCAAAGTGTCATGTTTCATGCTGCAACACATCGAAGAGCCCTGCTCATTAGGGGCTCACGCTGCTGTCGTCGTTCCTCCCACCTGGATTTTGCGGGTCCGACGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'17-15,'17-14,18-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(28.3=73.9)
A:
PF0013017=C1_1=FE(38.3=100)
C2:
PF0013017=C1_1=PD(28.3=43.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATAGTTGTCCGGCATCAC
R:
GACCCGCAAAATCCAGGTGG
Band lengths:
174-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]