RnoEX0027550 @ rn6
Exon Skipping
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80851932-80853017:-
Coord C1 exon
chr3:80852949-80853017
Coord A exon
chr3:80852140-80852211
Coord C2 exon
chr3:80851932-80852048
Length
72 bp
Sequences
Splice sites
3' ss Seq
GCCACCCTGTCCTCCCTCAGGGC
3' ss Score
10.36
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
CCAACCTTCGTAAGACACCACTGGGTCCACAGGCGACGCCAGGATGGCAAGTGTCGGCACTGTGGGAAG
Seq A exon
GGCTTCCAGCAGAAGTTCACCTTCCACAGCAAAGAGATCGTAGCTATCAGCTGTTCCTGGTGCAAACAGGCG
Seq C2 exon
TACCACAGCAAGGTGTCCTGCTTCATGCTGCAGCAGATTGAGGAGCCCTGTTCCCTAGGGGTGCATGCAGCCGTGGTCATCCCACCCACCTGGATCCTACGGGCCCGGAGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737-'24-23,'24-17,25-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(28.3=73.9)
A:
PF0013017=C1_1=FE(38.3=100)
C2:
PF0013017=C1_1=PD(28.3=43.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTAAGACACCACTGGGTCC
R:
TAGGATCCAGGTGGGTGGGAT
Band lengths:
161-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]