MmuEX0019390 @ mm10
Exon Skipping
Gene
ENSMUSG00000055805 | Fmnl1
Description
formin-like 1 [Source:MGI Symbol;Acc:MGI:1888994]
Coordinates
chr11:103197658-103198901:+
Coord C1 exon
chr11:103197658-103197778
Coord A exon
chr11:103198135-103198233
Coord C2 exon
chr11:103198483-103198901
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCTATTCCTCAAAACCTCAGTGC
3' ss Score
3.8
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
TCTCCACCCAAGGCCCGGCGACAACAGATGGACCTCATCTCTGAGCTAAAACGGAAGCAGCAGAAAGAGCCACTCATCTACGAGAGTGACCGAGATGGGGCCATCGAGGACATCATCACAG
Seq A exon
TGCTGAAGACAGTGCCCTTCACTGCCCGCACCGGCAAGCGGACATCCCGGCTCCTCTGTGAGGCCAGCCTGGGAGAGGAGATGACCCTTTAGCTCCCAG
Seq C2 exon
ATCTTCGGAACCAGCCCTACATCCGTGCAGACACAGGACGTCGAAGTGCTCGCCGGCGCCCCCCTGGACCCCCACTGCCGGTCACTACTGACCTCGCGCTGTAGTCACTGTTTCTGCTGGTGGATTCTAAAAGGCTGTAGGCAGGCTGGAGCTCAAAGAAGGTGGTCCTTAGCTCGGCTGGGTCGGGCGTCCTCTCCTCCTGCCGACTACTAGCCTTGAAGACTCCTCCACTCCACTCCACCCCCACCCCCCACCCCCCCAAAAACTGGTCGTAGCACCCTCTCCCTCCAATAGCCATACTCAGCCTGAGCGGGAGCCTGGCCTGTAACTTATAAAGTGCACCTCGCCGCCGCCCTAGCTCGGAAGACCCTCTATGGACCTTATTTTTATACAAGATTAATAAAGATGTTTGCAAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055805_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.765 A=0.067 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGAAAGAGCCACTCAT
R:
AAACAGTGACTACAGCGCGAG
Band lengths:
178-277
Functional annotations
There are 2 annotated functions for this event
PMID: 14990563
This event
A construct composed of the C-terminal half of FRLalpha (FRLalpha-C; inclusion of MmuEX0019390) is a dimer and has multiple effects on muscle actin, including tight binding to actin filament sides (also observed for beta; skipping), partial inhibition of barbed end elongation, inhibition of barbed end binding by capping protein, acceleration of polymerization from monomers, and actin filament severing. These multiple activities can be explained by a model in which FRLalpha-C binds filament sides but prefers the topology of sides at the barbed end (end-sides) to those within the filament. This preference allows FRLalpha-C to nucleate new filaments by side stabilization of dimers, processively advance with the elongating barbed end, block interaction between C-terminal tentacles of capping protein and filament end-sides, and sever filaments by preventing subunit re-association as filaments bend. Note: it does not compare the function of alpha (inclusion) with beta (skipping) for all experiments.
PMID: 19815554
[Negative results]. 293T cells transfected with FMNL1alpha (inclusion of HsaEX0026025) and FMNL1beta (skipping) showed mainly intracellular cytoplasmic distribution of FMNL1, whereas cells transfected with FMNL1gamma showed a distinct membranous FMNL1 localization as well as extensive polarized membrane protrusions and blebs. Inclusion/exclusion of HsaEX0026025 generates different C-term, as does the IR of gamma.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types