DreEX0033115 @ danRer10
Exon Skipping
Gene
ENSDARG00000004372 | fmnl3
Description
formin-like 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1571]
Coordinates
chr23:25514170-25522331:+
Coord C1 exon
chr23:25514170-25514293
Coord A exon
chr23:25516105-25516238
Coord C2 exon
chr23:25520101-25522331
Length
134 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTTCCTCCTCCTCAGTGC
3' ss Score
10.34
5' ss Seq
CAGGTTGTC
5' ss Score
-1.28
Exon sequences
Seq C1 exon
GTCCAGGCTCAGAAGAAGCGTCACCAGCAGCAGGAACTGATCGCGGAGCTGCGTCGCAGACAAGCCAAAGACCACCGGCCAGTGTATGAGGGCAAAGATGGCACCATTGAAGACATCATCACAG
Seq A exon
TGCTGAAGAGTGTGCCCTTCACAGCCCGCACGGCCAAACGGGGCTCGCGCTTCTTCTGCGATGCCAACCTCTTCGACGAGTCCATCTGCTAGCCCTCCCCCCCAAACCCCCCAAAACTGACCCTAATGCCGCAG
Seq C2 exon
ATCTCCGAAACCAGCCCTTCCTGCGAGCTGACGCGGTCATCCGGAACGGGTGGAAGCGACCCTAAAGACCCCTCACTCACTCACCCTCTGCTCCTCTCCCCCTGCTTTCTCCTCAAATGGTGTCTTCCTGCGATTCACAGTGGCCGAGGGAAGCACAGGACCAAACCACTGCCGCTGGTTTAAAGGGGAGGGCGGGAGTGGTAGTTGTTATTTATTTGTGGAAACTCTGCACTGGAGGCTCTTTTTACTAAAGCCATAAAAAGCACAGACATTAATGGCCGTCCTCATGAGCAAAAATCCAGAGGAGCGTCACTAAAAGCTTGCGTTGGCACTTGGAAAAAAAATGGCTGTGGTTGATACGCAGGCAGCGCTAACACTAACGTTAGCCTGCTGACCCTGAAGAGCCTTCCATTGACGTCCATTCATGTGGATTTCCTCTTATTGTGCAATGCAAGCATGACTTTCTGTCAAGTGGGAGCGTTGAGGTCACAGACTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004372-'33-40,'33-38,36-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGAAGAAGCGTCACCAGC
R:
GTGAATCGCAGGAAGACACCA
Band lengths:
255-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]