HsaEX0026051 @ hg38
Exon Skipping
Gene
ENSG00000161791 | FMNL3
Description
formin like 3 [Source:HGNC Symbol;Acc:HGNC:23698]
Coordinates
chr12:49636499-49647009:-
Coord C1 exon
chr12:49646886-49647009
Coord A exon
chr12:49646639-49646753
Coord C2 exon
chr12:49636499-49645903
Length
115 bp
Sequences
Splice sites
3' ss Seq
GTCTCTCTCCTGGGCCACAGTGC
3' ss Score
6.38
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ACCCCATCCCAGCGGAACAAGTGGCAACAGCAGGAGTTAATAGCAGAGTTGAGGCGGCGCCAGGCCAAGGAACACCGGCCTGTTTATGAGGGGAAGGATGGTACCATCGAGGACATCATCACAG
Seq A exon
TGCTGAAGAGTGTCCCTTTCACGGCCCGTACTGCCAAGCGGGGCTCACGCTTCTTCTGTGATGCAGCCCACCATGATGAGTCAAACTGTTAGCCCCCAAGGTTGGGGCCCGACAG
Seq C2 exon
GCCTCCACTGCCAGCCTATGGTTGTTCGCCACCAAGCCAGGAGTGCTGCACCGCCCAGTGGTCCCCCTCGGGCTCCAGGCCCCCACTGAGACCCTCTCGGAGGCAGAAGCACTTCACCCCTCAGAGTCCTACAAGTCCAACCAGTGGACCTGGAATTGGCCAAGGGCTCAGGAGAGGGCTGTGTTGCTCTCTCAACCATGTCCGCCCCAGCTCTTGAGGCTGGATCTTTCTACTTGTGCCACTATGGGCACTAGGTCTGTAGGTCCCTGGTGCTTCCAGTACTGCACTTTGCCCCCAAGGTCTTTGACTTCATTTCCTGAAGGGTCACCAAGGGTCAGCTCAGGGCTAGGAAAAACCATTTCCAGCCTTAGCCTAAACAGGGCACATAGATCTCTCCCACTAGAGCCCAGAGGGATGAGAGGAGAGAGCAACTGTTCTTTCTTTTTTTTTCCCTTCCTTTTTGCAGGCCCATGGTCAGCTCTGGTCTAGATGTATCTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161791-'40-52,'40-50,41-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.768 A=0.100 C2=0.931
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAACACCGGCCTGTTTA
R:
GTTGAGAGAGCAACACAGCCC
Band lengths:
255-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development