BtaEX0014808 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016593 | FMNL3
Description
formin-like 3 [Source:HGNC Symbol;Acc:HGNC:23698]
Coordinates
chr5:30370584-30372554:+
Coord C1 exon
chr5:30370584-30370707
Coord A exon
chr5:30370835-30370951
Coord C2 exon
chr5:30371624-30372554
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTCTCTCTCCTGGGCCACAGTGC
3' ss Score
6.38
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ACCCCATCTCAGCGGAACAAGTGGCAGCAGCAGGAGCTGATTGCAGAGTTGAGGCGGCGCCAAGCCAAGGAGCACCGGCCTGTTTACGAGGGGAAGGATGGTACCATTGAGGACATCATCACAG
Seq A exon
TGCTGAAGAGTGTCCCTTTCACGGCTCGTACTGCCAAGCGGGGCTCACGCTTCTTCTGTGATGCAGCCCACCATGATGAGTCAAACTGTTAACCCCCAAGGCTGGGGCCCTTGACAG
Seq C2 exon
GCCTCCACCACCAGCCCCTCGTCGTTCGCCATCCAGCCAGGAGTGCTGCACCACCCGCTGGTCCCCCTCGGGCTCCAGGCCCCCACTGAGACCCTCCTGGAAGCAGAAGCACTTCAACCCTCGGAGTCCTGCAGGTCCAGCCAGTGCACCTGAAGCCCTGCAGCTGTCCAAGGGCCCAGCAGAGGGCTGTGCTGCTCTCAGTCCATCCCAGCTCTCAAAGCTGCAGCTTGCCTGCCACCTCTGTGGGCACTAGGCCTTTCAGGGCCTGGCACTTCCCTGGTGCCTCCAGCACTGCACTTTGCTCCCAAGGTCTTCAACTTCATTTCCTCAAGAGCCAGCTCAGGGCTAGAAAAACCATTTCCAGCTTTAAGCTAGGCCACGGGCACCTAGGCCCGCCGTCACTAGAGGCAGAGGGAGGAGAGGAGAAAGCAAGTATCCCTTCTTTTTTCCCCTTACTTTTTGAATCCCAGTGGTCAGCTGTGATCTAGGAGTGTCCAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016593_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.873 A=0.100 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000022075fB2820
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGGGAAGGATGGTACCAT
R:
TGAGAGCTGGGATGGACTGAG
Band lengths:
255-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development