RnoEX0036419 @ rn6
Exon Skipping
Gene
ENSRNOG00000056297 | Fmnl3
Description
formin-like 3 [Source:RGD Symbol;Acc:1583854]
Coordinates
chr7:140981394-140983690:-
Coord C1 exon
chr7:140983567-140983690
Coord A exon
chr7:140983341-140983452
Coord C2 exon
chr7:140981394-140982791
Length
112 bp
Sequences
Splice sites
3' ss Seq
ATGTCTCTCCTGGGCCATAGTGT
3' ss Score
5.96
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ACTCCATCCCAGCGGAACAAATGGCAGCAGCAGGAGCTGATTGCAGAGCTGAGGCGGCGCCAAGCTAAGGAACACCGGCCTGTTTACGAGGGGAAGGATGGTGCCATTGAGGACATCATTACAG
Seq A exon
TGTTGAAGAGTGTCCCTTTCACGGCCCGTACTGCCAAGCGGGGCTCACGCTTCTTCTGTGATGCAGCTCACCATGATGAGTCAAACTGTTAGCCCTCACAGGGCCCTGACAG
Seq C2 exon
GCTTCAACCATCATCAACCCATGGTCACTCACAGCCAAGCCAGGAGTGAGTGCTGTACCACCCAGTGGCCCTCCTCGGGCTCCAGGTCCCCATTGAGATCCTCTTGGAGGCAGGAGTACTATAATTCTCAGAGTCCTGCAGACGTGGACAGTGAACCCAAAGCCCAGGGCCCGGCAGAAGGCTATGTTGTCCCAGCTGCAGCTGCTCCAGCTCTAAGGCTGACTCGTCCCTGTGCCACTGTGGGCACTAGGTCTGTAGGGGCCTAGCATTCTCCTAGTGCCCCACCCGCAAAGTGCACTTTGCCCCCAGTCTTCAACTTCAGTTCCTGAAGGGGTCAGTTCAGGGCTGGGAAAAACCACTTCCAACTTCAGCTCATTGAGGGTACACAGTCTCTCCCCTAGAGTCTCATGGGATAAGAGGAGGAGGATGTACATCCCATGAGAAATACTGATCGCCCCGCCCCCAGCACACACACACAGCACTAGTCTAGAGAGTGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056297_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.100 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAACACCGGCCTGTTTAC
R:
GGGACAACATAGCCTTCTGCC
Band lengths:
251-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]