RnoINT0061673 @ rn6
Intron Retention
Gene
ENSRNOG00000056297 | Fmnl3
Description
formin-like 3 [Source:RGD Symbol;Acc:1583854]
Coordinates
chr7:140983342-140983690:-
Coord C1 exon
chr7:140983567-140983690
Coord A exon
chr7:140983453-140983566
Coord C2 exon
chr7:140983342-140983452
Length
114 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
ATGTCTCTCCTGGGCCATAGTGT
3' ss Score
5.96
Exon sequences
Seq C1 exon
ACTCCATCCCAGCGGAACAAATGGCAGCAGCAGGAGCTGATTGCAGAGCTGAGGCGGCGCCAAGCTAAGGAACACCGGCCTGTTTACGAGGGGAAGGATGGTGCCATTGAGGACATCATTACAG
Seq A exon
GTGGGACATTTGTCCATTGGGCCTAATTCCTAGGGCCTGACCTAACCCCCTTTTGGCCATTCTTCCTAGTCTATTTCCCCACAAAACCTGATCAATGTCTCTCCTGGGCCATAG
Seq C2 exon
TGTTGAAGAGTGTCCCTTTCACGGCCCGTACTGCCAAGCGGGGCTCACGCTTCTTCTGTGATGCAGCTCACCATGATGAGTCAAACTGTTAGCCCTCACAGGGCCCTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056297:ENSRNOT00000092068:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATCCCAGCGGAACAAAT
R:
TGTCAGGGCCCTGTGAGG
Band lengths:
234-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]