BtaINT0063203 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016593 | FMNL3
Description
formin-like 3 [Source:HGNC Symbol;Acc:HGNC:23698]
Coordinates
chr5:30370584-30372554:+
Coord C1 exon
chr5:30370584-30370707
Coord A exon
chr5:30370708-30371623
Coord C2 exon
chr5:30371624-30372554
Length
916 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GCCTCTTGTCTTCCCCACAGGCC
3' ss Score
12.78
Exon sequences
Seq C1 exon
ACCCCATCTCAGCGGAACAAGTGGCAGCAGCAGGAGCTGATTGCAGAGTTGAGGCGGCGCCAAGCCAAGGAGCACCGGCCTGTTTACGAGGGGAAGGATGGTACCATTGAGGACATCATCACAG
Seq A exon
GTGGGCCCTTTGCCCTTCCTGACGCCTGGCCGCTGGGTGGCTCCCAAACCCCTCCCATAGCCCTTTGGGCCTCCTCCCACCCCACCCCCATGGGGCCTGACCACTGTGTCTCTCTCCTGGGCCACAGTGCTGAAGAGTGTCCCTTTCACGGCTCGTACTGCCAAGCGGGGCTCACGCTTCTTCTGTGATGCAGCCCACCATGATGAGTCAAACTGTTAACCCCCAAGGCTGGGGCCCTTGACAGGTACTGGGCACCACAGCTGCCCTCTGCATGCCCACCTCCCAGCACTCCTGCTGGGACCCACAGGCACCTCCTCTCCTGCATGATTTGGAACCATCCTCTGGCAGCCTCGTGGTGACGGGGGACACATACTTCTTCCCTTGCATGCCCCATGCTCTGAGAAGCGTGACTGATCCCCTGCATGTACCCTCAGGGAAGTGGTGCTCTCCCACTAATGCTGTCCTGGCTTCTACTAAGACCCAAGGGGTAGGGAGCTGTCCAAATAGCCAGGACCAGGCGCCACCTCTGATTACTGAGGCTGAGCAGCTCCAGTCCTGGGCCTGGGTGTCCGTTGTCCTTGCCTCCTCAAATGAGCTCTGGCAGTGGCTTCTGCCCAGGGACATCAGATGACCCTTGACCTGTATCCTGATATCCAGTCTGCCTGGCATCTCTTCCCAGCTTCTAGCTCTTGCTGAGTCCACCTTGTTTCTGCCATTCCCTAGTGACCTCTAGTACCCCCGCCTATTCTTCTGAACATGCAGAGTCCACCCTGACTGTCCACTCCAGCCTCTTTTAATCTCACTCATCAGCCTCACGGCTGGCTCTTCGCTAGACCTGCCTGTGGGGCTGGGCCTACAGAAGGTGGGCCTGGCCCAGCCTCCCTGCCTGTTCACAGGCCTCTTGTCTTCCCCACAG
Seq C2 exon
GCCTCCACCACCAGCCCCTCGTCGTTCGCCATCCAGCCAGGAGTGCTGCACCACCCGCTGGTCCCCCTCGGGCTCCAGGCCCCCACTGAGACCCTCCTGGAAGCAGAAGCACTTCAACCCTCGGAGTCCTGCAGGTCCAGCCAGTGCACCTGAAGCCCTGCAGCTGTCCAAGGGCCCAGCAGAGGGCTGTGCTGCTCTCAGTCCATCCCAGCTCTCAAAGCTGCAGCTTGCCTGCCACCTCTGTGGGCACTAGGCCTTTCAGGGCCTGGCACTTCCCTGGTGCCTCCAGCACTGCACTTTGCTCCCAAGGTCTTCAACTTCATTTCCTCAAGAGCCAGCTCAGGGCTAGAAAAACCATTTCCAGCTTTAAGCTAGGCCACGGGCACCTAGGCCCGCCGTCACTAGAGGCAGAGGGAGGAGAGGAGAAAGCAAGTATCCCTTCTTTTTTCCCCTTACTTTTTGAATCCCAGTGGTCAGCTGTGATCTAGGAGTGTCCAAGCTTAGCAAGCCCTGGACCCTGCCAGCCTCAGGTCTCCTTCTACCAGGAGCAAGGCCCTCCTAAGCCTGGGCCTGCCCAGCTGTGCCCTAGTGACAAGGAGGAGCGATCCCACACTCCCTGCCCATGGCCCTTTGCAGTCAAGGCTGACTCTGTCCTTGCCAATGTGAGCAGAGGGGTCGTTTCCTCTTCCCCAACCTGGAGACAGCAAGACAAAGGATGTGCCAACAGCATCCTCATTTTTCCCAGCTAGGTTTTGCTGGCAGGGGGCAGGGTCATGGTGGTCTCAGCTGTTTTCTCCATCCCCTGCCAGTTTCTTCTCAGTCCCTGAAGGGAACACAGGGGCCCACTCCTTTTTGTACATGTACCACTTCCTTCTCTCTTGTATATAAACCCCCAAACCTTCCTTCTCTCAACAAAGGCTTGAAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016593:ENSBTAT00000022075:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.873 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGGGAAGGATGGTACCAT
R:
AAGACCTTGGGAGCAAAGTGC
Band lengths:
352-1268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]