MmuINT0065148 @ mm10
Intron Retention
Gene
ENSMUSG00000023008 | Fmnl3
Description
formin-like 3 [Source:MGI Symbol;Acc:MGI:109569]
Coordinates
chr15:99317225-99319017:-
Coord C1 exon
chr15:99318918-99319017
Coord A exon
chr15:99318373-99318917
Coord C2 exon
chr15:99317225-99318372
Length
545 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TGCGCTTGTTTTCCCCACAGGCT
3' ss Score
11.81
Exon sequences
Seq C1 exon
TGTTGAAGAGTGTCCCTTTCACGGCACGTACTGCCAAGCGGGGCTCACGTTTCTTCTGTGATGCAGCCCACCATGACGAGTCAAACTGTTAGCCTGACAG
Seq A exon
GTACTGGGCACTCTAGCTGCCCTCTCTGCATGCCTTGGAGTCATCTTCTGGTAGCATCCTCCCAGTGATGGAGACACAGACTTTGCATGCTGCATGCTCTGAGAAACACAGCTTATCCCTGCATGGGTCCTCCCACTAATACTGTCCTAGCTACTAAGATCCAAGGGTTAAGGTGTCTCTGGGCCAGGGTTAGGAGCTAGGCCAGAGCAGGCAAGACCTAATGCTTTGGATGACTGAGGCTCCAGTCATAGACCCAAAGTATCTTGCTTGGGTCCTGGTCTCCCCTAAGAGTTCTAGTAGCTCCTACTCAGGGATAGATGTCCCTAACCTCTGCTTCTTGACATCTAGTTTGGCTTAATATTTTCCTGGGTGGCCTTTAGTTTCCTATGCTACCCTCTGAGAATCGTTCCAGCAGTTTTTCTAGCTGGCTCTCAAGCCTTCCTCTAAGAGCTTCCCTGACCTTTTCATGGCTGACTTCTTCCTCAGGTGCTGTCTTGCTCGGTGTCCCTGCCTAGTCACTGTTCATGCGCTTGTTTTCCCCACAG
Seq C2 exon
GCTTTAACCACCAACGCATGGTCGTTCACAGTCAAGTCAGGAGTGCTGTACCACCCAGTGGCCCTCCTCGAGCTCCAGGTCCCCACTGAGATCCTCCTGGAGGCAGAAGTACCTTAATTCTCAGAGTCCTGCAGATCTGGACAGTGGGCCCAGGGCCCAGCAGAAGGCTGTGTTGTTCAAGCTCCTGCTGCTCCAGCTGAGGCTGGCTCGTCCCTGTGCCACTGTGGGCACTAGGTCTATAGGGGTCTGACATTTCCCTAGTGCCCCCCATAGTGCACTTTGCCCCAAGTCTTCAACTTCATTTCCTGAAGGGTCAGTTCAGGGCTGGGAAAAACCACTTCCGGCTTCAGCACACGAGGGTACACAGCCCCCCTCTTCCCAGGGTCTAGTGGGATCCTAGAGGAGGAAGTACATCCAAGAAGAAATACGGGTCCCCCCACCCCGCCTTTGCAATCCCACAGTCAGCTCTGGTTTAGAGAGTATCCACACTAATGGATCCCTGGACTCTGCCAATATTGGATAATCTTTGCCTGGGCCCACTCTGCTGAGCCCTAGTAAAAAGGGACAGAGGAGCAATGGCAGGCCCACTGGCTGCCTGCGTCTTCAGGGTTCTTTTGTTGCTGTTCTGCTCTCCTAGACCCATGTCCCACCCACCTTGGCACCCATCTTCTTGGCTTCCTGAGCCAGCTGCTGTCCTGCATTGCCTCCTGCTCCACTTCCTTAAAACCAAAGGATTGTGGAGGAAGACCTGTGGCTTTCAAAAGTGGAAAAAGAAGGGCTAACACTTAACATGCAGAGTGGGTGGCAGTGGGAGCAGCTGACCCCTGGCGGTCTCCCTCTGGATGGGCACTTCCTGCTCCAAACAATGCAAGGAAGGGCTTGGACCCCACCCTGCCTGCTGTCTTCCCACTGATTGAAGAGCAGAGGCACTGTCTGTCCCAGCTCCAAGACTGCTAGAGGAAGGATGTGCCGCAATCTCACCTTTCCTCAGCTAGGTGGACTCTGGCCCAGGAACAGGCAACAGAGGATCTTCACAGACTATTTGCTCAATTCCCTACTGGGCTCTGACCCTGGAAGGGAATGCAGGGGCACTTTGTTTTGTATATGTATCTTTTCCTTTCTTGTACATAAATCCCAGACCTCTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023008:ENSMUST00000088233:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.828
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTCTGTGATGCAGCCCAC
R:
TGAAGACTTGGGGCAAAGTGC
Band lengths:
345-890
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types