HsaINT0065164 @ hg19
Intron Retention
Gene
ENSG00000161791 | FMNL3
Description
formin-like 3 [Source:HGNC Symbol;Acc:23698]
Coordinates
chr12:50031724-50040792:-
Coord C1 exon
chr12:50040669-50040792
Coord A exon
chr12:50039687-50040668
Coord C2 exon
chr12:50031724-50039686
Length
982 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
GTCTCTCTCTTCCCCCACAGGCC
3' ss Score
13.6
Exon sequences
Seq C1 exon
ACCCCATCCCAGCGGAACAAGTGGCAACAGCAGGAGTTAATAGCAGAGTTGAGGCGGCGCCAGGCCAAGGAACACCGGCCTGTTTATGAGGGGAAGGATGGTACCATCGAGGACATCATCACAG
Seq A exon
GTGGGGCCCTTTTCACTCCCTGGGGCCTGGCCATTGCACCCAGCTCCCAAAGCTCAACCTAACCCCTTTGGGCTCTCCTCCCACCCCACCCCCCATGAGGCCTGACCACTGTGTCTCTCTCCTGGGCCACAGTGCTGAAGAGTGTCCCTTTCACGGCCCGTACTGCCAAGCGGGGCTCACGCTTCTTCTGTGATGCAGCCCACCATGATGAGTCAAACTGTTAGCCCCCAAGGTTGGGGCCCGACAGGTACTGGGCACCGCAGCTGCCCCCTCTGCATGCCCGTCTCCCAGGATTCCTGCTGGGAGACCACAGGCACCTTCTTTCCTGCATGACTTGCAATCACCCTCTGGCAGCCTCCCAGCAATGGGGACACATACTTCTTGCATGCCCCATGCTCTGAGAAGTGTGGCATATCCCCTGCATGTGTCCTTAGGGAAGTGGTCTCTCTCCCACTAATGCTGTCCTGGCTTCTACTAAGACCAAGTGGGTAGGGAGTCACCAGGCCAGTGTTGAGAACAGGCCAGAGCAGGCAGGACCAGACCTACAGTTCTGATCTTTGAGGCTGAGGTTGAGGGTCCATTCCCAGGCCTAAGGAACCTTTCCCTACGGTTCTCTTCTCATAAGAGCTCTGGTAGTAGCTTCTGACCAGGAGGTATCAGATGTCCCTTGATCTGTTTCCTGACGTCCAGTCAGCCTGGGGTCTTTTCCTAGTTTCTGGCTCTTTCTGAATGCATCTACCTTGTCTCTCTCCACTGCCCAGTGGCCTCTAGTCACCCCAACCTGATCCTCTGAAATGCAAAGCCCAGCAATCTCCCCAACCAGCAATTTCCCCAACTGGGTACCCCTCAAGCCTTATCTAAGCCTCCTGTTTATCTGCCTCACTGCTGGCTCCTCCCTGGCCCTACCTGTGGGGCTGCTCTTGAGGGCACTGTCCTGGCTCACCCTCCCATCCTGTTCACAGGTCTCTCTCTTCCCCCACAG
Seq C2 exon
GCCTCCACTGCCAGCCTATGGTTGTTCGCCACCAAGCCAGGAGTGCTGCACCGCCCAGTGGTCCCCCTCGGGCTCCAGGCCCCCACTGAGACCCTCTCGGAGGCAGAAGCACTTCACCCCTCAGAGTCCTACAAGTCCAACCAGTGGACCTGGAATTGGCCAAGGGCTCAGGAGAGGGCTGTGTTGCTCTCTCAACCATGTCCGCCCCAGCTCTTGAGGCTGGATCTTTCTACTTGTGCCACTATGGGCACTAGGTCTGTAGGTCCCTGGTGCTTCCAGTACTGCACTTTGCCCCCAAGGTCTTTGACTTCATTTCCTGAAGGGTCACCAAGGGTCAGCTCAGGGCTAGGAAAAACCATTTCCAGCCTTAGCCTAAACAGGGCACATAGATCTCTCCCACTAGAGCCCAGAGGGATGAGAGGAGAGAGCAACTGTTCTTTCTTTTTTTTTCCCTTCCTTTTTGCAGGCCCATGGTCAGCTCTGGTCTAGATGTATCTAGGCTTAGGGAGCCCTGGGACCCTGCCAGTCTCAGTTCATCTCTTACCAGGAGCAAGGCCCTCTGAAGCATGGGCCGTGCCAGCTGTGCCCTAGTGATAAGGGTAAGAGGAGAGATGTCAGGCTCACTGCCCTTATTTCTCTGCCCATTTCATTCTAGGCTCACACTGTCCTTGTCAAGGTGGGCAGAAGAGCAGAGGTCTTCTCTGCACCAACCACTCTCTGCAGATGGCTGGAGAAAGGGTGTGCCAACTCTTCACCTTCTTTCCTCAGCTACGGTTTTTTTTTTTTTTTTTTTTTTTTTGGCAGGGGACAAGGAGCATGGTGGTCTTGGCTATTTGCTTACCTTCCCGTTTCTCCTCTGCCCCTGGAAGGGAATGTGGGGGCCCACTTTTTTGTACATGTACCACCTCCCTTTCCTCTTACTGTACATAAACCTCAGACTCTCCCCCTCTCAACAAAGGCTTGATGCACCAGGCCTGACTTTGTCTCCTCTTTCTGAGCTTAGGGGGCTAGGGTGGCCATTTAGTCTGACCTGGGCTATGGGGATAGAAAAGAAATCTTTGGGGCACTGCATCTGTTTTGGAGGAGATGAGATCAGAACTCTGGGGAAAGGAGAACCGGCTAGGTGGGCTCTAGCCACACAAAGGGAAGCAGGCCTGCCATGAGACACTAGTGCCCTCTGCTGGGCATGTGTCCAGTCCCCAGCCTGCCCCAGTAGCACATGGAAAAGAGTCACTGGCCATGTTATAAATATTGTTATTTAAAAAACAAAAAACAAAACACACGTACATTAGGTCCTGGGTGGAGGAAGAAGTGGTGGAGCCTCAGGGCCAGGGCAGGCAGGAGCAGGCACTGATGCTAGAGGGTGATGACCCTGCCCTCTGCCACCCAGGCTGCGTCCAACAGCCTGTGACTCTTCCCTGGAGACCCCTTCTCTCACACTTTTATCTACTGGCATCACCCACCCCACATGGCATATACCACCCATCTCTGGTCTGGGGCTGAGGGCAAGGACTGCACTAGTCCAGGGAGTAGGGGACCCTTGAACACCAAGAGCAACCTTGAGAGGTGCCAACAATGGTGTGCTGGGGGTGGGGTTACTTTAGAAAAAGTGGACACAGACCAGACTAAGGAAGAAGTCTGAGGCAGACGGTGAGGGTGGCCCAGGAGCCATGGCCTCACACAGACCCGAGGCAGAGAACAGCTCATTGGGTCACTGGTGATCATCCAGCTGCTGTAGGAGTGTCCGCCGCCGCCTCTCCAGCTCACCCTCACTCAGCTCACTTTCTGACGTGTCCCAGCCTGTCTGTTGGAGCAAAGGCACAGTTCACCCTTAGCCTGCACTAAGGGCCGTGGAAGCTTGACCAGCGTGCTGACTGGCCTAGGGCCCCTGCCCCTCACCTTCTCCTTCTTGATTCCAAAGCCTGGGGAACGGTTAGGGAGCTCTGCCTGTTGGAGCTCCCTGTCCTTGTCCTGTTCTTGTTCTTTCTCATCGCTCTCCTTGCCAGCTTTCTCCTCAGGGTCTGTCTCACTCTCAGGACTATTCTGTAAGAGTCCAGAGCCCACCTCCTCAGTTCCTGTGGATAGCCTGGGAGGCAGGTAGAACAGAACTCACAAAATAGCAGGGGCTTAGGTAGAAGTTCCTTCACTCACCGACTTGTGTCTTCTCTTCTTAGTTTTCTTTTTTGGTTTCTTGGCTTTCCGAAGGCCATGATCTAGAGATAGAAAAATCCCTACTAAGTCCCAACAGGAGAAAGACAGGCTCTTTTTCTTTGTTCTAGCCCCTCTGTTCATTCTTCACAGGCAGGAACCTCATGCTCTGAGGAAGTCTAAGTCCAGTTTTCCTTCTCCAGCTTCTTGCTTGGGCAGGTAGAGGAAGTTCTTTCTACTTCCACAGGTGCAGCCCTCCCAATCCAGTCTACCCTCAAAGGAGCTGGGGCTTGTGGAGGGCATCCTCTCAGTCTGGGACAACAGTTCTCCAGCTTCTACGCTCACAGCAACTGCTTACCTGCTCCAAGAAGATGGGAGGAAGGGGAGCCCCGTCCTCCAAGGGCAGCACCCCCACTTTCAACTGAATCAAGTGAGGAAGAGGGCTCAGAGCCTGACTCTGAGGGGTTCCGCCTCCTCCGCTTGGGGGGCCGGAGAGATGGTGGGGGCAGCTCCTCTTCTTCTGACTCAGAGCCCTGGGCAGATCAGCAGATACATGTCAGTGCAGAGGTTCTCTGCCCTCCAGAAGCCCTCGTCTGGGAATTCGAGAGAGGAGGAGGACCCAGGGCCAAAGGAATCCTCAAACTTCCCTCCAAGGGAGATATTGTAAGGGGAAAACAAAGTGTTTATTTCCCCAAAACAACCCAGCTTCACCCCATGTCCCTTCTACACGCTTACTCACTGAGGGTGAGTGGGAACGCTTGTGATGGTGCTTCTTGCCTTTCCTGCCATGCTTTCGGCCTTTGGTGTGGAGGTGCTGGCATTCAGTCTGCTAGAGGCAGAGGAAGAAGGGTGAGGACAGCACCAGACTTAGCCCCAGGAAGGATCCTACTTCCTAAAATCTGGCTTTGCCTCCCTTTCTCAGACTAGAGCCTTCTGCCTATCCCAGGGATCCTCAGGCCTCCCCTTCCTTAGCTGGCCAGGAGTGCCCTAAGGGTAAGAGGGAGGCCACTGAGGTCTCTGTTGAACTGGTCTAATGAGTTCAAGGGCCTGAGGCAGATCCAGAGGACAAGCCTGCCTCACCTCCAGCACCTGTAGGAACTCCCGGAAGAGCCGGATCCGCTCCGACTCCAGGGTGATCTGCTCAAAGGCTGAGTCACACACAAAACGCTCACGGACCTTGAACGAGGAGAGCACTGCTGATCAGACTAGGCCCCACTCAGCCTGGCCTGGACACCGCCATGAGCACAGGGCAGGGCTGGGGCAGAGAAAGGAAGGGAACTGGAGCTGGCCCAGGGCTGTGACGTGACTGGGGTGGGCCCTCAGTGGTGAAGCACCGCTGCCCTCAGGCTTGAGGGGTGCTTGGGGCCAGGCTACGCTCCTGACCTCTTCCCAGGCAGTGCCTAGCTCCAGAGCAGGCACAGCCTGCCTCAGCATGCTTCGAAAGGCAGCTTCCCTGCGCCGCATCCTGCGTGCCTCCTCCTTCTCCCGCTCCCTCTCCCGTGCCTCTGCTTTCTCCAGCAGCTGAGGAAAGAAGGGACACGGAACAGGGTCACCCAGGAGGGTGGATGCCAGGTCCCACTCAGGCATACCTTAGGAGGTGGAAAGTTAGGGTCTGGGCTTCTACCACCATCCCCTGAATTGGGAATATAGTCAGTGGGACAGTGAGTGAGAAGGAATGGAGCAAGACACAGATGAATTAGAGAACTTCCCACGCCCCGCCCAGCCCCTCACACTATTGAAGGTCAGCTTGATGTTGCCTGCGTCCAGTGCGGCAGCCCTCTTGTCAAAGCTTATGACGTGGGCGAAGTCCTCAAAGGCCGTGTTCACCTCCACGCAGAAGCCCCGGTCCTGTGGGTACAGCAGTGCATGAAGCAGGGGCACCACGTGCCTGAGGCCAAAGCTGGCAGGCAGAGTGGTCACATTACAGATGGTCAAGAAGGCCCTTGCCTCTGGAAGAGATCCACAGGACTGTGGTCTGCATTAGAAACCAAGTTATCCAAGTCCTCATCACTTGACAATTAAGCCCCCATGCCTACCCTTGGTTTGGATGTCACACAGAGCTGAAGGGGTTGGGAGATGTCTCCCAACTGCTGATTAATGCTGAGTTTCTCAAAATTAACTTTTGTTCCTTTGGCTTAAAGCTCTGGCCCCAGCTGGGCCCTCCTGCTGCTCAGCAGTGCTTCCATGCATTCTCAATCAACATTTGCTGGCCCCTACCCTTTGGGTCTATTTATTGAGTGCTTACTATGTACCAGGTACCATGATGAGTGTTTCACACATTATCTCATTTAATCCTCTTGGTTCTACATTTAAGAATAGGTCCTAGTATCCTAATTTTACACAGAAGGAGAAACCAAGGTTCAGAGAAACTAGAGCACTTGCCCAAGGTCTCACAGCTGATATACGGCTGGGCAAGAACCCTACCCTGGGGGGGCTCTCTATCCCCAAAGTGTCTGCTTTCAAGCACCACACCCACCCAGATGACTTAGTCCATGGGAGAAACGGAGGCCACCAGGTGTGCAGCTCCCCACCAATACTAAAAACATGTCCACAGGCCAGGCTCTATGCTTCTCATTTAGGCCTCACAACATTCCAGTGAAGCAGAGGCTTAGAAAAGTGATCTCAGTTGGCCCAAGATGACATGAGTGGTAAATGAAGCCACTGGAGTTCAAAGTCTGGCTCTCACGTCAGTTAAGCACAGGCCAGATTCCCTTTCTCTCCCTCCACATAGCTCTCACCTCCTCTGGCCTTTTTGCTGATGGCAGAGGTGTGCTCCTCTTTCTTCTTTCCAAGGGTACTTCCTCAACCCTGCTACAGTCCTTATCAACACAGCATTCATTCTCAGGGAATTGAAAGCTCCAAGTCACCCTTGTTACTGGCTCCTTCCATCAAGCAGACACCTCACCTAACCTGGAACATCCTTTCCACCATGCTCTCCCCTTCATCAAGCTAACTACCTCTGCTCTTTTCCATTGTTTCAAAACCTCTTGAAATGCAGCAGAAAGGAAAAGGAATAAACATTTATTGAGAACCTATTAGACACTTTACAGATGTTATTTAATTCTCACAACCTTACCTATGAATTATCCCTGATTTACAGGTGAGCAAACAGGCTCAGAGACACGGAACTTACGGAGGTCTCAGAGCCAATAAGCAACCAGGAGTAATCTGACTCTAAAACATGTGCTGCCCCCATGCCACCTCCATGACTCTACTCTCCCAAAGGTTGCTTGTGTCTACTAGCCAAATCCAAGGCCGCCTTCTTTGTCCTCACTCATCTGGTCCTCAGTGCCTCTACCACTTACTTCTTCAACACTCCCCTCTCCAGGTCACACCCTCTCTGACCTTTTATTCTCTTGCATATGCATGTTCCTGAGAACAGCACTTAGTCCTCTTTCACTACCCAATCTGTACTCCCTCGCAATCTCATCCTTCATCTCTCCTGATTTTCAAACATCCTAGACTGGATATTTCAGACACTTAAAATTCAACAGATCTCAAGAGAATATATTTCTCATGAGCATCCTCCATGGATCTCCCTGACCCGGATCTGTCTGCCTGTTCTAAGTCCAGGGCTCTTTGCATTATCCTATGGGATGAAAGGCACCATCATGGTCTGCCTGGCTGTGGAAAGCAAGAGGGACTCCTGGGCTCATCTGCCCTCCATAGGCAGGAACCCAAATGGGGAAAGAGGAAGGGAACTGTCTAAAAAAGTTGCTTTCTCAGGTTGTGTGGAGAGACAGGACTCAGTGAGGATAGGCCCCTACAGGCCTATCAACCAGCCACTCTGTGGCTAAAAGTTAATTGTCCAATAAAATTTAGCTATCCCAGGATAAGGCATTTCTACTTTATACGATTATTCTGTTTTAAAATATATTTGCTTTGAGAGTAATTCCCCAAATAGAATTCCTATTTTCTACAGCCTTGCTCTTCTTGTTTTATCCTTATCAATAGTGCCATCATCCACTGCCCTGACACCTCTGATTCCTTCCTTTCCCTCCATTTCACAAAATCTATCAATTCTACTTAGTGACTCTATCCCACTGGTGTTGAATTCTCCCTTTTTTTTTTAAACAGCAGAAACAGTTTATTAAAATAGAAATCTTATGTAGAACCTTTATGCATAAAAAAGATTCAAGCTGCTTCACTTGAAAACAGGAAGCAGCACCAAATCCCCCCATACTCAACTCCAACCCTTGCTTGTCTCAAGGCACCTACATAGAAACCCAGAGTGTCTCAGAAGAACAGCTGGAGCGCTACAGCCTGCTCTCTTCTGCTGTCCCCACTGCCCCCGGCTAGGATCACCTCCTACAAGATTCCTGCACAGCCTACTGACTTTTCTCCCTGCTCACCCTCTTCCATCCCTCTAACCCAGCTCCTAGCATCTAGTGCTTCTTGGACTTTTGTACCAAGTAGCCCCAACAGTAGGAGAGAGGTCTGGGGATAAGTGAAATGAATATGACTATTTGAATTACCACTATCAGTTTTAGTATCTTGAGGCTTCAAGAACTGCTCTACCTAGCACCACCACCTTCCCTAAGGACATAAGTACGTACTCTAGACTGAAAGGTTCTACTATACACCATCTAATCTGATCATTCCCCGGTTCCTCATTACTTACGAGAGAAAAATCCAAATTTCTTATTTTAGCATTCAAGGCACTTTACATGCAGGGCTCTACTTCCAAGCTGGGGCATGTGGTTCCAGAGAAAGAGAGGATACCTCAGGACAGTATGATACATCTTACCTAATGGTAAGTAATTTAAAATATTAAATTTATATTAAATAGGTAATATGGTGTTAAAATGCAACACCTACGTGAATTTGTAAGGCAAAACAGTACTTCAAAGAAATGTATATGCAGTGAGACATTTCTAGCTTTATTTCCAGATCCCTTTCAACCCAGGTACCATTTAATCTCTGTAATTAGGTGTACTCTGGTGGAACACTCACCATTTTTTAGATGAGGAAACAGGGTCAGAAAGGTCAAGTGACCTATCCAAGGTCACACAACTAGCAAGCAGTTAAGCTAGACTTTTACTGTAGGCAGTCTGCCTCCAGTCCCGCTCCTAACCACTGTACTGTATTATCTCCTCAAATGCATTAGAATCTTCACTTCCATAAAGAAATATGCTCTTTGTTTTTTTCTTTTGGAACACAAGGTTTAGTCCATCACTCACTCACTTTTCCACTTTTGATAAGATGTAAATATTGAGAACTATTTCTCTTCTCCAGTAGAAGAAGAGCAACAGGCCATGTGTGATGGTAAATGGCAGCTGACACTTGCGACAGTATCAAGAAGGCACTAAGGAATGGTGAGAAGGATGACTTGCCCTTTCTAAAGTGGCATCTCAGCTTGAGTCTGCAGAATGCCTTGCAAATCCAGCTCAGTACTGCTAGATAATCCATATTGACAAGAGAAGCTAAAGATTCAGATTTTCTATGTGAAGTTTCCTGGTTTTAAAATGTTAGCAACAAATTCCAAATTTTTACAGAACACTGTACAGGCCAGAAAGAACAATCTGTGTGCTACCAGTTTACAATTAGCTATGCTTCTTCCTCCTCAGACCTGGCATGCCCTTTCCACCCCCTTGCCTTTGCTCTTAGTACCCCGTGTACACTCCAACCTCTTCCACCTACAAATTTCTAAATGCACAGTTCAAATGTTAGTTCTTCAGATTCCTGTCTCTGTAATAACACTTGCCCCTTTGTATAACAGTTCTCATGTATATCTTCCTATTAGACCATGAGCTCCTGTGGTAGAAATTGTGTATTCATTACTGTATCCCTAGTGTGCAGTAAAGGATCACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161791-FMNL3:NM_175736:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.774 A=NA C2=0.931
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCTGTTTATGAGGGGAAG
R:
GTCAAAGACCTTGGGGGCAAA
Band lengths:
357-1339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)