DreINT0069102 @ danRer10
Intron Retention
Gene
ENSDARG00000004372 | fmnl3
Description
formin-like 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1571]
Coordinates
chr23:25514170-25516238:+
Coord C1 exon
chr23:25514170-25514293
Coord A exon
chr23:25514294-25516104
Coord C2 exon
chr23:25516105-25516238
Length
1811 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CCCTCCTTCCTCCTCCTCAGTGC
3' ss Score
10.34
Exon sequences
Seq C1 exon
GTCCAGGCTCAGAAGAAGCGTCACCAGCAGCAGGAACTGATCGCGGAGCTGCGTCGCAGACAAGCCAAAGACCACCGGCCAGTGTATGAGGGCAAAGATGGCACCATTGAAGACATCATCACAG
Seq A exon
GTGGGCCGAGCAGGACTACATTACCCATCAGCCAGGGCTCCAGAATCACTGTGGTGGTCCATAGCTCTCCCCGTCAGCAGTGTACTCTGTGTTATGTCAAACAGCAGCCCTTAAAGCTCCGTGACCACACATTACAAGTGCACATCAGCAAAAAATCATGCTTTAGACTGTGATTCAACTCTTAGGGATCTTCACTTAATTATATTAAGCACTAACTAAAAGTGTCAATAAATCATACAGATTTTTCATGTAGTGATAATGAAATACAGCCAAAAATGTAGTGTAAAGATTGTGCACATGCTTACAGAAATGTATAGCTTAATTATAAACAATATCCCAGCCTTAATGAAGCCATAGTTTATATTACTGACAAAATGACGAATAATAATTTCTCCTGTTCTCCTCAGCCACAGAATTCAGGATTTGATCTGCATTAATGCTTCCTATTTAAGTAGTTTCGTCATAACCTGTGTTTTGTTTTGATGTGTATATATGTTTAACATAATGGTTTATTCCTAAAGGTCATCCATGTCTTCTGTGTCCAGGGGCATCATTGATTAATATATTTAATATTTCTTCCTTAAAATAATCATATTTCACAATCTGAGGTTTACAATACTGTTCAGAAGTTTGGGGTTGGTAAAAGGCTTTTAAACGTTTAATGCTTTTAAAGGTATTTCATTCTGACCAATGTTTCATTTATTTGTTCAAAACATGCAAATTATTAATATAACATTATTTATGGATATTCATATTTTGGAATATCTTTTTTGTACTTTGAAATGTGTTTTATTAATTTGATTGTCACTATTAATTAGTCATTTAATCTTTCAGCTGTCTATATGATGATTTGAAGCTCCAGAAATCACTGTAAGCTATTTTTTGTAACACTAATAATCAGTGGTCAATTTCGTACCTGTGAAATTTATTTCATTTCTTCCTAAATTCAGTTGTAATGTTCGTTGATTTTTTTTTCAGTTTTCATAGACTAAATTTTAATTGTTAAAAACCATTCTAAAATTTTATAACAATTAATAATTTAACCCACTAAATTAGTTTGACCTTTTCTCAAATTCTGTATTTTTCCTTTTTTTGCAATGATTCCTAAGCAAACAAAGAATCATCATCATCATCATCATTATTATTTGGTTAAACTGAAATAAATCATATTTATATAGTACTTATCCAGATTAATTTTCACAGAACCTAGTCCACAATTCGGATTTGTTAAGGTATATATTACTATTTTTATTTTACTCATCCAAAATGTAGCAAATTCCATAACATTCCAAGTTATAGCAAATTCTGTTTTCATGAAGGGATTCAGGGTAAAGTCTAGATGGCATACAGCTGTGGATACATCAATATTGCATAATTTTTTTGTGACACTGTACAACAATATTAATATGTAACATTAATAATAAATCTTTTGAACGTTGGGGTAGGAGTAGATGTTTATAAAATACAATTTATTGGGTAATTTAATAAATTATCTGAATAATTGCCAATAACTTCTGGCTGTATATCTATCATTTTCCCTGCTGCATAACAAAATAGACGATAATTAGAAAAAAATTATACTGACCCCAAACGTCTGAACAGTATTGTACCTAGAATATTTTGTGATGTTTTGATACTTGATCATACAAAATTGTCCAGCCATACAGGCGGCAAGCAAGGTGACTCCTGCGACTATTCTATGGCTGTTAAAAAGGATTGAGTATATTGTGCACTCTTATATGAGCAGCCAGTTTGCTCGTGCCTAACCTCAGATGTGATATTTTCTATCTGCCCTCCTTCCTCCTCCTCAG
Seq C2 exon
TGCTGAAGAGTGTGCCCTTCACAGCCCGCACGGCCAAACGGGGCTCGCGCTTCTTCTGCGATGCCAACCTCTTCGACGAGTCCATCTGCTAGCCCTCCCCCCCAAACCCCCCAAAACTGACCCTAATGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004372:ENSDART00000144554:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTCAGAAGAAGCGTCAC
R:
CTGCGGCATTAGGGTCAGTTT
Band lengths:
255-2066
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]