MmuINT0065147 @ mm9
Intron Retention
Gene
ENSMUSG00000023008 | Fmnl3
Description
formin-like 3 [Source:MGI Symbol;Acc:MGI:109569]
Coordinates
chr15:99149349-99149685:-
Coord C1 exon
chr15:99149562-99149685
Coord A exon
chr15:99149449-99149561
Coord C2 exon
chr15:99149349-99149448
Length
113 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
CTGTCTCTCCTGGGCCGTAGTGT
3' ss Score
6.95
Exon sequences
Seq C1 exon
ACTCCATCCCAGCGGAACAAATGGCAACAGCAGGAGCTAATTGCAGAGCTGAGGCGGCGCCAAGCTAAGGAACACCGGCCTGTTTACGAGGGGAAGGATGGTACCATTGAGGACATCATCACAG
Seq A exon
GTGGGACGTTTGTCCACTGGGCCCAATTCCCAGAGCCTGACCTAATTCCCTTTGGTCCTGCTTCCTAGTCTGTTTTCCCATAAGACCTGATCACTGTCTCTCCTGGGCCGTAG
Seq C2 exon
TGTTGAAGAGTGTCCCTTTCACGGCACGTACTGCCAAGCGGGGCTCACGTTTCTTCTGTGATGCAGCCCACCATGACGAGTCAAACTGTTAGCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023008-Fmnl3:NM_011711:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCCCAGCGGAACAAATG
R:
GTCAGGCTAACAGTTTGACTCGT
Band lengths:
220-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: