MmuEX0019405 @ mm9
Exon Skipping
Gene
ENSMUSG00000023008 | Fmnl3
Description
formin-like 3 [Source:MGI Symbol;Acc:MGI:109569]
Coordinates
chr15:99147656-99149685:-
Coord C1 exon
chr15:99149562-99149685
Coord A exon
chr15:99149349-99149448
Coord C2 exon
chr15:99147656-99148803
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTCCTGGGCCGTAGTGT
3' ss Score
6.95
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ACTCCATCCCAGCGGAACAAATGGCAACAGCAGGAGCTAATTGCAGAGCTGAGGCGGCGCCAAGCTAAGGAACACCGGCCTGTTTACGAGGGGAAGGATGGTACCATTGAGGACATCATCACAG
Seq A exon
TGTTGAAGAGTGTCCCTTTCACGGCACGTACTGCCAAGCGGGGCTCACGTTTCTTCTGTGATGCAGCCCACCATGACGAGTCAAACTGTTAGCCTGACAG
Seq C2 exon
GCTTTAACCACCAACGCATGGTCGTTCACAGTCAAGTCAGGAGTGCTGTACCACCCAGTGGCCCTCCTCGAGCTCCAGGTCCCCACTGAGATCCTCCTGGAGGCAGAAGTACCTTAATTCTCAGAGTCCTGCAGATCTGGACAGTGGGCCCAGGGCCCAGCAGAAGGCTGTGTTGTTCAAGCTCCTGCTGCTCCAGCTGAGGCTGGCTCGTCCCTGTGCCACTGTGGGCACTAGGTCTATAGGGGTCTGACATTTCCCTAGTGCCCCCCATAGTGCACTTTGCCCCAAGTCTTCAACTTCATTTCCTGAAGGGTCAGTTCAGGGCTGGGAAAAACCACTTCCGGCTTCAGCACACGAGGGTACACAGCCCCCCTCTTCCCAGGGTCTAGTGGGATCCTAGAGGAGGAAGTACATCCAAGAAGAAATACGGGTCCCCCCACCCCGCCTTTGCAATCCCACAGTCAGCTCTGGTTTAGAGAGTATCCACACTAATGGATCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023008_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=0.100 C2=0.828
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAACACCGGCCTGTTTAC
R:
GGAGCTTGAACAACACAGCCT
Band lengths:
243-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: