MmuINT0065094 @ mm10
Intron Retention
Gene
ENSMUSG00000055805 | Fmnl1
Description
formin-like 1 [Source:MGI Symbol;Acc:MGI:1888994]
Coordinates
chr11:103197658-103198901:+
Coord C1 exon
chr11:103197658-103197778
Coord A exon
chr11:103197779-103198482
Coord C2 exon
chr11:103198483-103198901
Length
704 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTGCTTCCTTTGCCCGCCAGATC
3' ss Score
9.78
Exon sequences
Seq C1 exon
TCTCCACCCAAGGCCCGGCGACAACAGATGGACCTCATCTCTGAGCTAAAACGGAAGCAGCAGAAAGAGCCACTCATCTACGAGAGTGACCGAGATGGGGCCATCGAGGACATCATCACAG
Seq A exon
GTGAGAGCCAGGCCACTGTCCCGTCTCCAGTCTCCATTATGTCCTTCTCTTCCTCTATTTCTCCCCACGCTGAGGGGTCTGCTGCCTCCTCCCACCTCCGTTCTCATTGCGCAGCCCTGGCTTGCCTGGAACTTGCTGTGTAGACCAGGCTGTCCTCAAACTCAGAGATTCTCTTATCTCTGCTCCTGCAGTGGTGGGATCAAAGCCGTTCATATGCCAAGATGCCTGGTCTGCATATCTCTTGCTACCTTTTCTGTTTTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACCTTCTATTCCTCAAAACCTCAGTGCTGAAGACAGTGCCCTTCACTGCCCGCACCGGCAAGCGGACATCCCGGCTCCTCTGTGAGGCCAGCCTGGGAGAGGAGATGACCCTTTAGCTCCCAGGTACCTAGATAACCTGGTCTGTGACTCCAGTGCTGGTGGAAGCCTGGGAATTTGGGGCGCGCGCGCACGGGGGGGGGAGGGGCAGACATGCTTCCCCATCCTGGGCCACTACATGGCTGGGATGTTTTAGAGGGTGGTGTTTCTGGCTGTGGTAAATGAGTGTCCCCTTCCACGTGTACAAAATCAAGTCCTTAGAAAGATGAGCCTGTGCCCTGAAGCCTGGGCCAATGTGCTTCCTTTGCCCGCCAG
Seq C2 exon
ATCTTCGGAACCAGCCCTACATCCGTGCAGACACAGGACGTCGAAGTGCTCGCCGGCGCCCCCCTGGACCCCCACTGCCGGTCACTACTGACCTCGCGCTGTAGTCACTGTTTCTGCTGGTGGATTCTAAAAGGCTGTAGGCAGGCTGGAGCTCAAAGAAGGTGGTCCTTAGCTCGGCTGGGTCGGGCGTCCTCTCCTCCTGCCGACTACTAGCCTTGAAGACTCCTCCACTCCACTCCACCCCCACCCCCCACCCCCCCAAAAACTGGTCGTAGCACCCTCTCCCTCCAATAGCCATACTCAGCCTGAGCGGGAGCCTGGCCTGTAACTTATAAAGTGCACCTCGCCGCCGCCCTAGCTCGGAAGACCCTCTATGGACCTTATTTTTATACAAGATTAATAAAGATGTTTGCAAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055805:ENSMUST00000042286:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.765 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGAAAGAGCCACTCAT
R:
ATTGGAGGGAGAGGGTGCTAC
Band lengths:
357-1061
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types