RnoINT0061625 @ rn6
Intron Retention
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91280720-91281416:+
Coord C1 exon
chr10:91280720-91280818
Coord A exon
chr10:91280819-91281027
Coord C2 exon
chr10:91281028-91281416
Length
209 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
GTGTCTCCTTTGATTGCTAGATC
3' ss Score
7.49
Exon sequences
Seq C1 exon
TGCTCAAGACAGTGCCCTTCACTGCCCGTACTGGCAAGCGGACATCCCGGCTCCTCTGTGAGGCCAGCCTGGGAGAGGAGATGACCCTCTAGCTCCCAG
Seq A exon
GTACCTACATAACCTGGCCTTTGGTCTGGGAATATGGGGGAGCAGATATGCCTCCTCATCTCGGGCCGCTGCATGCTGGGATGTTTTTAGAGGGTGCTGTTTCTGGCTGTGGTAAATCAGTGTCCCCTCCCACGTGTACAGAATCAAGGCCTTAGAAAGAGGAGCCTATGCCCTGAAGCCTGGGCTAATGTGTCTCCTTTGATTGCTAG
Seq C2 exon
ATCTTCGGAACCAGCCCTACATCCGTGCAGACACAGGACGCCGAAGTGCTCGCCGGCGCCCCCCTGGACCCCCACTGCCGGTCACTGCTGACCTCTCGCTGTAGCCACTGTTTCTGCTGGTGGATTCTATAGGGCCATAGGCAGGTTGGAGCTCAAAGGTGGTGGTCCTTAGCTCGGCTGGATCGGGCATCTGCTCCTTCTAGACTACTAGCCTTGAAGACCCCCCCCCCCCCAAAAAAAGCTGGTCCCAGCACCCTCTCCCTCCAATAGCCATAATTAGCCTGAGCGGGATCCTGGCCTGTAACTTATAAAGTGCACCTCGCCGCCGCCCTAACTCGGAGGACTCTCCTTGGACCTTATTTTTATACAAGATTAATAAAGATGTTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207:ENSRNOT00000065373:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGACCCTCTAGCTCCC
R:
TATTGGAGGGAGAGGGTGCTG
Band lengths:
292-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]