HsaINT0065114 @ hg38
Intron Retention
Gene
ENSG00000184922 | FMNL1
Description
formin like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr17:45246505-45247320:+
Coord C1 exon
chr17:45246505-45246604
Coord A exon
chr17:45246605-45246866
Coord C2 exon
chr17:45246867-45247320
Length
262 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
GTGTCTCCTTCGGCTGCCAGATC
3' ss Score
8.51
Exon sequences
Seq C1 exon
TGATCAAGACGGTGCCCTTCACGGCCCGCACCGGCAAGCGGACATCCCGGCTCCTCTGTGAGGCCAGCCTGGGAGAAGAGATGCCCCTCTAGCCCCTCAG
Seq A exon
GTACCCAGATGACCTGGCCTCTGATACCACGCTGCCCACAGCCCCTGGGACCCTTGGGAGAACTGAGGCATGCTGCCTTCTCCTGGGCCAGTGGATGGCTGGGATGTGATTTGTGGGGTGGAGGGGTCTGGCAAACATAAACGGTACCCCTGCCATGTGCACACAATCTGAGTCCTTAGGAGGCTAAGCTTTGTGCCCTGGAGCCATGCTCCCAGCTCTGGGCGGACTCCTGAATGGTAAATGTGTCTCCTTCGGCTGCCAG
Seq C2 exon
ATCTGCGGAACCAGCCCTACATCCGCGCAGACACAGGCCGCCGCAGTGCCCGTCGGCGTCCCCCGGGCCCCCCACTGCAGGTCACCTCCGACCTCTCGCTGTAGCCGCTATTTCTGCAGGTGGATTCTGCAGGGGTGTGGGGCCGTGGACAGGCTGAGGCTCAAGGAAGGTGGTCCTCAGCTCGGCTGGCCGGGCAGCCCCTCCTCCGCTGTGGCCCGCCTCAAACGGGCTGGTGCATCCTCCTCTTGGCCACAGAGGGCAGCATCGCCCGCCCCTTCCCCCAAATGCTGCTTGCAGCACCCACCCTAAAGCCCCCTCCAAATAGCCATACTTAGCCTCAGCAGGAGCCTGGCCTGTAACTTATAAAGTGCACCTCGCCCCCGCAAGCCCCAGCCCCGAGGACCGTCCATGGACCTTATTTTTATATGAGATTAATAAAGATGTTTGCAAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922:ENST00000331495:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGGGAGAAGAGATGCC
R:
CTCTGTGGCCAAGAGGAGGAT
Band lengths:
292-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development