BtaINT0063163 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004196 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr19:45519089-45520053:+
Coord C1 exon
chr19:45519089-45519209
Coord A exon
chr19:45519210-45519727
Coord C2 exon
chr19:45519728-45520053
Length
518 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TCTCTCCTCTCCACCGCCAGATC
3' ss Score
10.44
Exon sequences
Seq C1 exon
TCCCCTCCCAAGGTCCGGCGGCAACAGATGGACCTCATCTCTGAGCTAAAACGGAAGCAGCAGAAAGAGCCACTCATCTATGAGGGTGACCGTGATGGGGCCATTGAAGATATCATCACAG
Seq A exon
GTGGGGGCTTGGCAGGTGCTGTCCTGTCCTGGGTCTGTCCTACACTGTCTTCCATCCACCCCCCAACCCCGGGGGGGCGGTCAGGATCTGTCTGCCTCACTGCCTCTTTGCTACTTTTTCTGTCTTTTTCCCTTTTTCCTTTCTCTCCTGGCTCCTTCCTTCCAACCCTCAGTGCTCAAGACAGTGCCCTTCACTGCTCGCACCGGCAAGAGGACGTCCAGGCTCCTCTATGAGGCCAGCCTGGGAGAGGAGATCCCCCTCTAGCCCCCAGGTACCCACCAGCCCGGCCTCGGATCCCAGTGGCTGCTCACAGCCCTGCGGGCTCCTGGGGGGTCTGAGTCATCTGCCCTCTCCTGGGCCAGGCACCGGGCTGGGGTGTGTTGGAAGGAGGTCTGATAAACAAACAGGCTCCCTCCCACGTGCGCACAACCTGGAGGGGTGAGGCCCGTGCCCTTGAGTGGTGTCCCAAGCCTGGGCAGACCCCCTGAAAAGTAAATGTCTCTCCTCTCCACCGCCAG
Seq C2 exon
ATCTACGGAACCAGCCCTACATCCGCGCAGACACAGGCCGGCGAAGCGCTCGTCGGCGCCCACCGGGACCCCCGCTGCAGGTCACTTCTGACCTCTCGCTGTAGTCACTATTTCTGCAGATGGACTGCGAGGCCTGGGAGCCGGGGGCGGGGAGGGGCAATCCGGGACTCAAGGAAGGTGGGACTCAGCTCGGCTGGGCCGGGCAGCCTCCTTCGCCAAGGTCCCCATCCCTGGGCGCCCCTCGAATGGGCAGGGGCACCCCTCATCTTGCCACAGGGAGAGGATCTCTGGCCCCTCCCCCCAAATGCTGCTTGCAGCACCCCGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004196:ENSBTAT00000034825:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.699 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGAAAGAGCCACTCAT
R:
CCAGAGATCCTCTCCCTGTGG
Band lengths:
356-874
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development