GgaINT0143097 @ galGal3
Intron Retention
Gene
ENSGALG00000000694 | FMNL1
Description
NA
Coordinates
chr27:1350738-1351686:+
Coord C1 exon
chr27:1350738-1350861
Coord A exon
chr27:1350862-1351582
Coord C2 exon
chr27:1351583-1351686
Length
721 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CGCACTTTCTCCCGCTGCAGATC
3' ss Score
10.14
Exon sequences
Seq C1 exon
TCACCATTCCAGAAAGCCAAGCGGCAGCAGATGGACATGATTGCTGAGCTGAAGAAGAAGCAGATGGTGAAGGAGCCACTCATTTATGAAGGCAAAGACGGGGCCATCGAGGACATTATTTCAG
Seq A exon
GTGAGCGGCCGGGCGTCCCCCCTGCAGCCACGCCTGGGGCTCAGGCCGTGCCAGCACAGGGCCCTTGGGGCAGGACATCGGGTGGGGCCATGGCTCATCACACAGTGAAGTTCTGGGCCGGGCCCCCAGCTCTGCTGTCTCAGTGGCACCGCAGGGACAGCCTCGGGGATATGGGGGTGTCAGCAAGGAGCAGAGGGCCCTCGAGCACAGTGCAGAGCCCAGACCCACCTGCAGCACCTTCCTGTCGCACGCAGCGAGGCTGCCGACCTCTCTGCCCTGTCTCACAGCTCTTCCTCCTCTTCTGCTCCTTCTTCCTTCCCTCCTTCCTCCTCCTCGCTGTCTCTGGATTGCTGTGCTCAGCTCTGAAAACTGTTCCTTTCACGGCCCGGACGGGCAAGCGCTCGTCCCGGCTCTTCTGCGATGTGAGCTTCAGCGAGGAGAGTCCCCTGTAGTGGCTGCCTGTAGGTAATGGGGCGGGGGCTGCGGGTAGGGGGCTGCAGCACGGCGGACCTCCAGCGCCGGGCACAGGCAGGGCTGGGGAGTGGGGCACACACACCGCTTGTTCCTGGCTCCTCAACTTCCACCTGTGTGCTGCTGGTTGTGCTTCCGAGCAGCCTCGTACCTGGGGCGTGAGGGAAGGTTCCGTCAGTGGGCGCTGCTGGGGCAGGCAGGACACGGCAGGCTGCGGCTCACTGCCGCTCCGCACTTTCTCCCGCTGCAG
Seq C2 exon
ATCTGCGGAACAACCCGTACCGGCGCGCAGATAAGGGCCGCGGCAGCGCCAAGAAGCGGGCGGTGGGGCAGAGCCTGCAGGCCACGCCGGACATCTCGCTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000694:ENSGALT00000040749:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.941
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATTCCAGAAAGCCAAGCG
R:
CACAGCGAGATGTCCGGC
Band lengths:
225-946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]