MmuEX0020160 @ mm10
Exon Skipping
Gene
ENSMUSG00000026829 | Gbgt1
Description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 [Source:MGI Symbol;Acc:MGI:2449143]
Coordinates
chr2:28496891-28498441:+
Coord C1 exon
chr2:28496891-28497064
Coord A exon
chr2:28497669-28497836
Coord C2 exon
chr2:28498376-28498441
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATTGGAACATTTCTTTGCAGGCG
3' ss Score
5.66
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTCCTAAAGCTTGGTCAGCCCAAAGGGAGTGGTTCTATAATCCCAAAGACAGTCTCATCTGCTCTGCCCTACCCGACTGGGTCCTTGCACCGTACCCCACCGCAGCCGCTGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGTCCCAGTGCCAGAACAAGCTGGACAAAGTTCAG
Seq A exon
GCGTTTCTAAGACCTCAAGTGAGGTAGGCCCAGAGCCTGACAGACCTAAGGCCCTAGGGGTTTCTGAAAGTGCCCAGTTTCTATTCTGCACCCAGTGATGACCCGCCCAAGACTGGCCCAGGGCCTAGCGTTCTTCCTGCTCGGTGGCACAGGTCTCTGGGTCCTGTG
Seq C2 exon
GAAGTTTATCAAGGACTGGCTGCTGGTCTCCTACATACCCTATTACCTCCCCTGCCCAGAGTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026829_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF034148=Glyco_transf_6=PU(3.9=54.2)
C2:
PF034148=Glyco_transf_6=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGGGAGTGGTTCTATAATCCC
R:
AAGAACTCTGGGCAGGGGAG
Band lengths:
221-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types