MmuEX0024726 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108363763-108366952:+
Coord C1 exon
chr6:108363763-108363947
Coord A exon
chr6:108366171-108366208
Coord C2 exon
chr6:108366804-108366952
Length
38 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTCCTTTCCTACAGCTG
3' ss Score
12.4
5' ss Seq
AGGGTACAT
5' ss Score
3.77
Exon sequences
Seq C1 exon
CCAAGAGCCGGGCCATAGCCATTCCTGTTGACCTGGACAGCCAAGTCAACAACCTCTTCCTGAAGTCCCACAACATTGTGCAGAAAACAGCCCTGAACTGGCGGTTATCAGCCCGAAACGCCGCTCGCAGAGACTCTGTACTGGCAGCATCCAGAGACTACCGAAATATCATTGAGAGGTTACAG
Seq A exon
CTGTGTGTTTTGCATTTGAAGACCATCATGCTATCAGG
Seq C2 exon
GACATCGTGTCTGCCCTAGAGGACCGGCTCAGGCCCCTGGTGCAGGCTGAGCTGTCTGTGCTCGTGGATGTTCTACACAGACCAGAACTGCTCTTCCCCGAGAACACGGATGCCAGGAGGAAATGTGAGAGTGGAGGTTTCATCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'43-43,'43-42,44-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGAACTGGCGGTTATCAG
R:
TCCTCTAGGGCAGACACGATG
Band lengths:
118-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: